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+#' peptideSet class

+#'

+#' This class gathers all information from gpr files, annotation data and sequence data

+#'

+#' @section Slots:

+#' \describe{

+#'  \item{featureRange}{A \code{GRanges}object. The ranges and sequences of

+#' the peptides and their associated annotation.}

+#'  \item{phenoData}{An \code{AnnotatedDataFrame}. Annotation for the samples.}

+#'  \item{assayData}{}

+#'  \item{featureData}{}

+#'  \item{annotation}{}

+#'  \item{protocolData}{Slots inherited from \code{ExpressionSet}.}

+#' }

+#'

+#' @details

+#' See \code{?`peptideSet-methods`} for a list of accessors and method associated

+#' with the class.

+#'

+#' @seealso \code{\link{ExpressionSet}}, \code{\link{peptideSet-methods}}

+#'

+#' @importFrom Biobase ExpressionSet

+#' @importClassesFrom Biobase Versioned VersionedBiobase eSet ExpressionSet

+#' @importClassesFrom GenomicRanges GRanges

+#' @name peptideSet

+#' @rdname peptideSet

+#' @aliases peptideSet-class

+#' @exportClass peptideSet

+#' @author Greg Imholte

+#'

+setClass("peptideSet",

+         contains=c("ExpressionSet"),

+         representation(featureRange="GRanges")

+)

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