@@ -75,6 +75,7 @@ importFrom(randomcoloR,distinctColorPalette)

 importFrom(reshape2,melt)

 importFrom(stats,as.formula)

 importFrom(stats,dist)

+importFrom(stats,hclust)

 importFrom(stats,lm)

 importFrom(stats,median)

 importFrom(stats,model.matrix)

@@ -203,9 +203,9 @@ runPipeline <- function( datasets, alternatives, pipelineDef, comb=NULL,

   res <- lapply(resfiles, readRDS)

   errs <- lapply(res, FUN=function(x) x$errors)

   if(length(unlist(errs))>0){

-    errs <- errs[!sapply(errs,is.null)]

+    errs <- errs[!vapply(errs, FUN.VALUE=logical(1L), FUN=is.null)]

     errs <- lapply(errs, .removeRedundantErrors)

-    errs <- data.frame(dataset=rep(names(errs), sapply(errs,length)),

+    errs <- data.frame(dataset=rep(names(errs), lengths(errs)),

                        step=unlist(errs))

     row.names(errs) <- NULL

     message("

@@ -333,6 +333,7 @@ scrna_describeDatasets <- function(sces, pt.size=0.3, ...){

 #' @param ... Passed to each calls to `Heatmap`

 #'

 #' @return A HeatmapList

+#' @importFrom stats hclust

 #' @export

 #'

 #' @examples

@@ -9,4 +9,7 @@ Changes in version 0.99.23 (2020-04-21)

 + Standardized results heatmaps for any PipelineDefinition

 Changes in version 0.99.27 (2020-04-29)

-* the plotting functions for the scRNAseq clustering pipeline (`scrna_evalPlot_DR` and `scrna_evalPlot_clust`) have been replaced by more flexible, pipeline-generic functions (`evalHeatmap`) and a silhouette-specific plotting function (`scrna_evalPlot_silh`). The general heatmap coloring scheme has also been changed to make meaningful changes clearer.

++ the plotting functions for the scRNAseq clustering pipeline (`scrna_evalPlot_DR` and `scrna_evalPlot_clust`) have been replaced by more flexible, pipeline-generic functions (`evalHeatmap`) and a silhouette-specific plotting function (`scrna_evalPlot_silh`). The general heatmap coloring scheme has also been changed to make meaningful changes clearer.

+

+Changes in version 0.99.43 (2020-07-20)

++ there is no the possibility to continue runs despite errors, and enlarged merging capacities