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+main <- function() { |
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+ context('selModel') |
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+ |
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+ fin_gtf = system.file('extdata/gtf/selModel_in.gtf', package='pram') |
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+ fcmp_gtf = system.file('extdata/gtf/selModel_out.gtf', package='pram') |
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+ fout_gtf = paste0(tempdir(), '/pram_selModel_out.gtf') |
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+ |
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+ selModel(fin_gtf, fout_gtf, min_n_exon=2, min_tr_len=200, |
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+ info_keys=c('transcript_id', 'gene_id')) |
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+ |
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+ cmp_lines = readLines(fcmp_gtf) |
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+ out_lines = readLines(fout_gtf) |
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+ |
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+ test_that(paste0(fout_gtf, ' vs ', fcmp_gtf), |
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+ expect_identical(cmp_lines, out_lines)) |
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+} |
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+ |
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+main() |