<!-- README.md is generated from README.Rmd. Please edit that file --> # poplin <!-- badges: start --> <!-- badges: end --> The goal of poplin is to … ## Todo - [x] Define poplin class - [x] Coerce method between SummarizedExperiment <-> poplin - [x] Setters and getters for transformed data - [x] Setters and getters for dim-reduced data - [x] Subsetting function for poplin class - [ ] Functions for imputations: - [x] count missing values - [ ] helper for visualizing missing patterns - [ ] half-minimum - [ ] imputation by iterative PCA - [ ] bagged tree - [ ] knn (may need to drop) - [ ] Functions for normalization - [ ] Functions for dimension reduction (PCA, PLS-DA, t-SNE …) - [ ] Functions for feature filtering - [ ] Functions for addressing batch-effects - [ ] Support for basic stats - [ ] Feature annotation