\name{layout.arc} \alias{layout.arc} %- Also NEED an '\alias' for EACH other topic documented here. \title{ Layouts a graph using arcs. } \description{ Generates a layout for graphs that places in the center the target transcription factors, in the sides the enriched transcription factors and in between of them the bridge proteins. } \usage{ layout.arc(g, target, query) } %- maybe also 'usage' for other objects documented here. \arguments{ \item{g}{ the graph object to layout. } \item{target}{ list of target nodes (typically target transcription factors.) } \item{query}{ list of query nodes (typically enriched transcription factors.) } } \value{ A matrix with the x and y locations of each node in the target graph. } \author{ Diego Diez }