... | ... |
@@ -4,8 +4,11 @@ |
4 | 4 |
\alias{getDrugActivityRepeatData} |
5 | 5 |
\title{Returns a matrix containing repeat activity experiment data for a compound.} |
6 | 6 |
\usage{ |
7 |
-getDrugActivityRepeatData(nscStr, concFormat = "NegLogGI50M", |
|
8 |
- onlyCellMinerExps = TRUE) |
|
7 |
+getDrugActivityRepeatData( |
|
8 |
+ nscStr, |
|
9 |
+ concFormat = "NegLogGI50M", |
|
10 |
+ onlyCellMinerExps = TRUE |
|
11 |
+) |
|
9 | 12 |
} |
10 | 13 |
\arguments{ |
11 | 14 |
\item{nscStr}{a string specifying the NSC identifier for the compound.} |
... | ... |
@@ -31,6 +34,4 @@ actData <- getDrugActivityRepeatData(nscStr, concFormat='NegLogGI50M') |
31 | 34 |
actData <- getDrugActivityRepeatData(nscStr, concFormat='IC50MicroM') |
32 | 35 |
|
33 | 36 |
} |
34 |
-\concept{ |
|
35 |
-rcellminer |
|
36 |
-} |
|
37 |
+\concept{rcellminer} |
... | ... |
@@ -1,4 +1,4 @@ |
1 |
-% Generated by roxygen2 (4.1.1): do not edit by hand |
|
1 |
+% Generated by roxygen2: do not edit by hand |
|
2 | 2 |
% Please edit documentation in R/getDrugActivityRepeatData.R |
3 | 3 |
\name{getDrugActivityRepeatData} |
4 | 4 |
\alias{getDrugActivityRepeatData} |
... | ... |
@@ -12,14 +12,14 @@ getDrugActivityRepeatData(nscStr, concFormat = "NegLogGI50M", |
12 | 12 |
|
13 | 13 |
\item{concFormat}{a string selected from "NegLogGI50M" or "IC50MicroM". |
14 | 14 |
"NegLogGI50M" specifies activities as the negative log of the 50% growth |
15 |
-inhibitory concentration (molar). "IC50MicroM" specifies activities as the 50% |
|
15 |
+inhibitory concentration (molar). "IC50MicroM" specifies activities as the 50% |
|
16 | 16 |
growth inhibitory concentration (micromolar).} |
17 | 17 |
|
18 | 18 |
\item{onlyCellMinerExps}{a logical value indicating whether to only return |
19 | 19 |
experimental data included in CellMiner (default=TRUE).} |
20 | 20 |
} |
21 | 21 |
\value{ |
22 |
-a matrix with activity data from each experiment associated with |
|
22 |
+a matrix with activity data from each experiment associated with |
|
23 | 23 |
a compound organized along the rows. |
24 | 24 |
} |
25 | 25 |
\description{ |
... | ... |
@@ -29,6 +29,7 @@ Returns a matrix containing repeat activity experiment data for a compound. |
29 | 29 |
nscStr <- "609699" |
30 | 30 |
actData <- getDrugActivityRepeatData(nscStr, concFormat='NegLogGI50M') |
31 | 31 |
actData <- getDrugActivityRepeatData(nscStr, concFormat='IC50MicroM') |
32 |
+ |
|
32 | 33 |
} |
33 | 34 |
\concept{ |
34 | 35 |
rcellminer |
1 | 1 |
new file mode 100644 |
... | ... |
@@ -0,0 +1,36 @@ |
1 |
+% Generated by roxygen2 (4.1.1): do not edit by hand |
|
2 |
+% Please edit documentation in R/getDrugActivityRepeatData.R |
|
3 |
+\name{getDrugActivityRepeatData} |
|
4 |
+\alias{getDrugActivityRepeatData} |
|
5 |
+\title{Returns a matrix containing repeat activity experiment data for a compound.} |
|
6 |
+\usage{ |
|
7 |
+getDrugActivityRepeatData(nscStr, concFormat = "NegLogGI50M", |
|
8 |
+ onlyCellMinerExps = TRUE) |
|
9 |
+} |
|
10 |
+\arguments{ |
|
11 |
+\item{nscStr}{a string specifying the NSC identifier for the compound.} |
|
12 |
+ |
|
13 |
+\item{concFormat}{a string selected from "NegLogGI50M" or "IC50MicroM". |
|
14 |
+"NegLogGI50M" specifies activities as the negative log of the 50% growth |
|
15 |
+inhibitory concentration (molar). "IC50MicroM" specifies activities as the 50% |
|
16 |
+growth inhibitory concentration (micromolar).} |
|
17 |
+ |
|
18 |
+\item{onlyCellMinerExps}{a logical value indicating whether to only return |
|
19 |
+experimental data included in CellMiner (default=TRUE).} |
|
20 |
+} |
|
21 |
+\value{ |
|
22 |
+a matrix with activity data from each experiment associated with |
|
23 |
+a compound organized along the rows. |
|
24 |
+} |
|
25 |
+\description{ |
|
26 |
+Returns a matrix containing repeat activity experiment data for a compound. |
|
27 |
+} |
|
28 |
+\examples{ |
|
29 |
+nscStr <- "609699" |
|
30 |
+actData <- getDrugActivityRepeatData(nscStr, concFormat='NegLogGI50M') |
|
31 |
+actData <- getDrugActivityRepeatData(nscStr, concFormat='IC50MicroM') |
|
32 |
+} |
|
33 |
+\concept{ |
|
34 |
+rcellminer |
|
35 |
+} |
|
36 |
+ |