# scAnnotatR
The `scAnnotatR` package automatically classifies cells in scRNA-seq datasets. It is simple to use with a clear infrastructure to easily add additional cell type classification models. `scAnnotatR` support both `Seurat` and `SingleCellExperiment` objects as input.
## Installation
You can install the latest version directly from GitHub using the `devtools` package:
```r
# install devtools if needed
if (!require(devtools)) {
install.packages("devtools")
}
if (!require(scAnnotatR)) {
install_github("grisslab/scAnnotatR")
}
```
## Help
The complete usage is shown in the vignettes:
* [Basic classification of cells](vignettes/classifying-cells.Rmd)
* [Basic training of a new cell classification model](vignettes/training-basic-model.Rmd)
* [Training of child-celltype models](vignettes/training-child-model.Rmd)
For more questions / feedback please simply post an [Issue](https://github.com/grisslab/scAnnotatR/issues/new).
