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# scTreeViz
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This package provides methods to interactively explore and visualize datasets with hierarchies. eg. single cells datasets with hierarchy over cells at different resolutions.
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For a walk through of various features of the app, checkout the vignette at
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https://hcbravolab.github.io/scTreeViz/Explore-PBMC.html
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## Installation and requirements
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`scTreeViz` currently requires a development version of `epivizrData` which supports Sparse Measurements. We plan to push this to `bioc` soon.
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To install `scTreeViz`,
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```{r}
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BiocManager::install("epiviz/epivizrData")
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BiocManager::install("HCBravoLab/scTreeViz")
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```
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***Note: you can also use devtools to install the package from github***
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## Usage
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To try out and explore the various features of the package, we provide the PBMC 3K dataset and the vignette `Explore-PBMC` walks you through the process.
To checkout all the vignettes
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```{r}
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library(scTreeViz)
browseVignettes("scTreeViz")
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```
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