# scTreeViz
This package provides methods to interactively explore and visualize datasets with hierarchies. eg. single cells datasets with hierarchy over cells at different resolutions.
For a walk through of various features of the app, checkout the vignette at
https://hcbravolab.github.io/scTreeViz/Explore-PBMC.html
## Installation and requirements
`scTreeViz` currently requires a development version of `epivizrData` which supports Sparse Measurements. We plan to push this to `bioc` soon.
To install `scTreeViz`,
```{r}
BiocManager::install("epiviz/epivizrData")
BiocManager::install("HCBravoLab/scTreeViz")
```
***Note: you can also use devtools to install the package from github***
## Usage
To try out and explore the various features of the package, we provide the PBMC 3K dataset and the vignette `Explore-PBMC` walks you through the process.
To checkout all the vignettes
```{r}
library(scTreeViz)
browseVignettes("scTreeViz")
```
