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Package: scmeth
Type: Package
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Title: Functions to conduct quality control analysis in methylation data
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Version: 0.99.27
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Author: Divy Kangeyan <[email protected]>
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Maintainer: Divy Kangeyan <[email protected]>
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Depends: R (>= 3.5.0)
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Imports:
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ggplot2,
knitr,
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rmarkdown,
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bsseq,
AnnotationHub,
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GenomicRanges,
reshape2,
stats,
utils,
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BSgenome,
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DelayedArray (>= 0.5.15),
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annotatr,
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SummarizedExperiment (>= 1.5.6),
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GenomeInfoDb,
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Biostrings,
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DT,
ggthemes,
scales,
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viridis,
magrittr,
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plyr,
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HDF5Array (>= 1.7.5)
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Suggests:
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BSgenome.Mmusculus.UCSC.mm10,
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BSgenome.Hsapiens.NCBI.GRCh38,
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Biobase,
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BiocGenerics
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Description: Functions to analyze methylation data can be found here.
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Some functions are relevant for single cell methylation data but most other
functions can be used for any methylation data.
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Highlight of this workflow is the comprehensive quality control report.
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biocViews: DNAMethylation, QualityControl, Preprocessing, SingleCell
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License: GPL-2
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LazyData: TRUE
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RoxygenNote: 6.0.1
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VignetteBuilder: knitr
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