@@ -1,7 +1,7 @@

 Package: scmeth

 Type: Package

 Title: Functions to conduct quality control analysis in methylation data

-Version: 1.1.2

+Version: 1.1.3

 Author: Divy Kangeyan <[email protected]>

 Maintainer: Divy Kangeyan <[email protected]>

 Depends: R (>= 3.5.0)

@@ -23,7 +23,8 @@

 #'directory <- system.file("extdata/bismark_data",package='scmeth')

 #'bs <- HDF5Array::loadHDF5SummarizedExperiment(directory)

 #'mbiasDirectory=system.file("extdata",package='scmeth')

-#'report(bs,'~',Hsapiens,'hg38',mbiasDir=mbiasDirectory,small=TRUE)

+#'outDir <- system.file(package='scmeth')

+#'report(bs,outDir,Hsapiens,'hg38',mbiasDir=mbiasDirectory,small=TRUE)

 #'@importFrom scales comma

 #'@importFrom scales comma

 #'@importFrom viridis scale_fill_viridis

@@ -43,5 +43,6 @@ library(BSgenome.Hsapiens.NCBI.GRCh38)

 directory <- system.file("extdata/bismark_data",package='scmeth')

 bs <- HDF5Array::loadHDF5SummarizedExperiment(directory)

 mbiasDirectory=system.file("extdata",package='scmeth')

-report(bs,'~',Hsapiens,'hg38',mbiasDir=mbiasDirectory,small=TRUE)

+outDir <- system.file(package='scmeth')

+report(bs,outDir,Hsapiens,'hg38',mbiasDir=mbiasDirectory,small=TRUE)

 }