@@ -4,6 +4,11 @@

 #'e.g. Mmusculus or Hsapiens

 #'@param genome reference alignment, i.e. mm10 or hg38

 #'@return Data frame with sample name and coverage in repeat masker regions

+#'@examples

+#'library(BSgenome.Mmusculus.UCSC.mm10)

+#'library(AnnotationHub)

+#'load(system.file("extdata", 'bsObject.rda', package='scmeth'))

+#'repMask(bs, Mmusculus, 'mm10')

 #'@importFrom DelayedArray colSums

 #'@importFrom bsseq getCoverage

 #'@export

@@ -20,3 +20,9 @@ Data frame with sample name and coverage in repeat masker regions

 \description{

 Provides Coverage metrics in the repeat masker region

 }

+\examples{

+library(BSgenome.Mmusculus.UCSC.mm10)

+library(AnnotationHub)

+load(system.file("extdata", 'bsObject.rda', package='scmeth'))

+repMask(bs, Mmusculus, 'mm10')

+}

@@ -166,7 +166,7 @@ the genome build information.

 ```{r, warning=FALSE, message=FALSE}

 library(BSgenome.Mmusculus.UCSC.mm10)

 load(system.file("extdata", 'bsObject.rda', package='scmeth'))

-#repMask(bs, Mmusculus, "mm10")

+repMask(bs, Mmusculus, "mm10")

 ```

 ### Coverage by Chromosome