Bioconductor Code: seqCAT

Graph of seqCAT

116312f (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 11:14:28 -0400;
5a3cc85 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 11:14:28 -0400;
ecf25e0 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:22:27 -0400;
e0768b3 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:22:27 -0400;
ffb24b8 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:00:50 -0400;
bb9e200 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:00:50 -0400;
9cc4004 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 10:59:50 -0400;
2a592c3 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 10:59:50 -0400;
8663403 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:56:42 -0400;
bcb3485 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:56:42 -0400;
f2a5e1b bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:16:23 -0400;
b778c7c (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:16:23 -0400;
9a7d01c bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:43:28 +0000;
ed9e2ad (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:43:28 +0000;
2a3dc7e (origin/RELEASE_3_14, RELEASE_3_14) Bump version in release by Erik Fasterius <[email protected]> 2022-02-14 09:24:42 +0100;
3981df0 Fix unnesting of `AsIs` class by Erik Fasterius <[email protected]> 2022-02-07 09:28:09 +0100;
ccc5fe0 Bump version by Erik Fasterius <[email protected]> 2022-02-08 07:37:12 +0100;
940e520 Fix unnesting of `AsIs` class by Erik Fasterius <[email protected]> 2022-02-07 09:28:09 +0100;
eef6de2 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:38:15 +0000;
5dbbb87 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:38:15 +0000;
a806d9f (origin/RELEASE_3_13, RELEASE_3_13) Version bump for bugfix by Erik Fasterius <[email protected]> 2021-10-10 17:55:09 +0200;
aeea28f Fix bug in new versions of tidyr by Erik Fasterius <[email protected]> 2021-10-10 17:51:56 +0200;
a73cf8e Bump version by Erik Fasterius <[email protected]> 2021-10-10 17:53:11 +0200;
705dfca Fix bug in new versions of tidyr by Erik Fasterius <[email protected]> 2021-10-10 17:51:56 +0200;
2428fa6 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 16:30:29 +0000;
b7e6ffe bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 16:30:29 +0000;
37b811a bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 11:27:45 -0400;
61ed7f7 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 11:27:44 -0400;
11da770 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 19:10:31 +0000;
651738c (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 19:10:31 +0000;
4617d4e (origin/RELEASE_3_10, RELEASE_3_10) Increment to 1.8.1 by Erik Fasterius <[email protected]> 2020-03-27 06:24:47 +0100;
0bef846 Rename unit tests with new order by Erik Fasterius <[email protected]> 2020-03-24 08:25:38 +0100;
7f7471f Delete unit tests for plots by Erik Fasterius <[email protected]> 2020-03-24 08:22:40 +0100;
0c183ab Merge branch 'master' of git.bioconductor.org:packages/seqCAT by Erik Fasterius <[email protected]> 2020-03-24 12:09:51 +0100;
5657f39 Rename unit tests with new order by Erik Fasterius <[email protected]> 2020-03-24 08:25:38 +0100;
2d11ca6 Delete unit tests for plots by Erik Fasterius <[email protected]> 2020-03-24 08:22:40 +0100;
ff74ca9 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:42:28 -0400;
2357901 bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:10:45 -0400;
4d3c3aa Increment to 1.7.6 by Erik Fasterius <[email protected]> 2019-09-19 08:57:41 +0200;
c389148 Fix malformed NEWS by Erik Fasterius <[email protected]> 2019-09-19 08:57:26 +0200;
f8f03b3 (origin/RELEASE_3_9, RELEASE_3_9) Add additional fixes related to `tidyr-1.0.0` by Erik Fasterius <[email protected]> 2019-08-14 18:25:48 +0200;
8bc309a Increment to 1.7.5 by Erik Fasterius <[email protected]> 2019-08-14 18:12:43 +0200;
02c5f93 Import `rlang` by Erik Fasterius <[email protected]> 2019-08-14 16:08:09 +0200;
6197286 Fix error with index filtering of tibbles by Erik Fasterius <[email protected]> 2019-08-14 15:29:14 +0200;
8e6f69f Additional `unnest()` fixes by Erik Fasterius <[email protected]> 2019-08-14 14:43:12 +0200;
ad6df8c Merge branch 'RELEASE_3_9' by Erik Fasterius <[email protected]> 2019-08-14 13:19:38 +0200;
42f92f1 Merge branch 'RELEASE_3_9' of git.bioconductor.org:packages/seqCAT into RELEASE_3_9 by Erik Fasterius <[email protected]> 2019-08-14 13:17:55 +0200;
1b621bc Increment to 1.6.2 by Erik Fasterius <[email protected]> 2019-08-14 13:16:33 +0200;
a52bc4f Add compatibility with upcoming tidyr changes by Erik Fasterius <[email protected]> 2019-08-12 13:38:43 +0200;
dd8c51f Increment to 1.6.2 by Erik Fasterius <[email protected]> 2019-08-14 13:09:15 +0200;
fc1f811 Increment to 1.7.4 by Erik Fasterius <[email protected]> 2019-08-14 13:03:04 +0200;
6f6d63d Fix error in `unnest()` function call by Erik Fasterius <[email protected]> 2019-08-14 12:59:26 +0200;
4449ee0 Fix error in `unnest()` function call by Erik Fasterius <[email protected]> 2019-08-14 12:23:30 +0200;
115325b Increment to 1.7.3 by Erik Fasterius <[email protected]> 2019-08-12 14:12:20 +0200;
b1d0345 Merge branch 'new-1.6.1' by Erik Fasterius <[email protected]> 2019-08-12 13:55:18 +0200;
3f9dd48 Add compatibility with upcoming tidyr changes by Erik Fasterius <[email protected]> 2019-08-12 13:38:43 +0200;
f5d4747 Add Anaconda Cloud version badge to README by Erik Fasterius <[email protected]> 2019-08-12 13:25:40 +0200;
7078edb Use `separate()` instead of `separate_()` by Erik Fasterius <[email protected]> 2019-08-12 12:51:33 +0200;
3a4a7b0 Fix impact filtering and update tests by Erik Fasterius <[email protected]> 2019-08-12 12:36:52 +0200;
fd5db32 Add compatibility with upcoming tidyr changes by Erik Fasterius <[email protected]> 2019-08-12 11:38:07 +0200;
422e0ac Increment to 1.7.2 by Erik Fasterius <[email protected]> 2019-06-28 15:03:21 +0200;
a1bb475 Rename `convert_to_gr` function to `df_to_gr` by Erik Fasterius <[email protected]> 2019-06-28 14:15:42 +0200;
b315f32 Update `compare_many` documentation by Erik Fasterius <[email protected]> 2019-06-28 14:15:26 +0200;
456d9d2 Add subsetting for tumour site in COSMIC data by Erik Fasterius <[email protected]> 2019-06-28 12:44:25 +0200;
8b1ae5d Fix conversion of dataframes to GRanges objects by Erik Fasterius <[email protected]> 2019-06-28 12:43:13 +0200;
31f8698 Fix output of `filter_variants` function by Erik Fasterius <[email protected]> 2019-06-28 09:54:47 +0200;
d429eaa Add read parameter to specify sample names by Erik Fasterius <[email protected]> 2019-06-27 15:53:14 +0200;
2dc3ff7 Fix vignette index entry by Erik Fasterius <[email protected]> 2019-06-20 13:00:26 +0200;
06b9a7d Merge branch 'filter' by Erik Fasterius <[email protected]> 2019-06-20 12:13:16 +0200;
39c495c Add vignette section on variant filtration by Erik Fasterius <[email protected]> 2019-06-20 11:56:45 +0200;
6326657 Rename filter variables for clarity by Erik Fasterius <[email protected]> 2019-06-20 11:56:32 +0200;
3be815a Add separate function for de-duplication by Erik Fasterius <[email protected]> 2019-06-20 10:44:16 +0200;
69cb957 Separate profile creation and variant filtration by Erik Fasterius <[email protected]> 2019-06-14 13:50:53 +0200;
00ac993 Update NEWS by Erik Fasterius <[email protected]> 2019-06-14 14:15:16 +0200;
6ba4239 Add optional variant de-duplication by Erik Fasterius <[email protected]> 2019-06-14 11:36:27 +0200;
0869be1 Update vignette with non-standard chromosomes by Erik Fasterius <[email protected]> 2019-06-14 10:51:35 +0200;
f540958 Add test for non-standard chromosomes by Erik Fasterius <[email protected]> 2019-06-14 10:46:23 +0200;
7573139 Remove non-standard chr in profile creation by Erik Fasterius <[email protected]> 2019-06-14 10:45:07 +0200;
e91159b Clarify NEWS text by Erik Fasterius <[email protected]> 2019-06-12 10:16:53 +0200;
65eb659 Add examples of reading/writing to the vignette by Erik Fasterius <[email protected]> 2019-05-13 14:22:49 +0200;
21ad87d Add `rtracklayer` to imports by Erik Fasterius <[email protected]> 2019-05-13 14:18:34 +0200;
e3626f4 Add unit tests for reading new file foramts by Erik Fasterius <[email protected]> 2019-05-13 14:04:34 +0200;
e9c0ba6 Generalise `read_profile` for multiple formats by Erik Fasterius <[email protected]> 2019-05-13 13:42:00 +0200;
9310306 Add `write_profiles` wrapper function by Erik Fasterius <[email protected]> 2019-05-13 13:40:39 +0200;
64f85a0 Remove redundant test data by Erik Fasterius <[email protected]> 2019-05-13 12:57:57 +0200;
35305c8 Add writing of profiles to BED, GTF and GFF by Erik Fasterius <[email protected]> 2019-05-13 12:28:19 +0200;
94a9592 Remove redundant unit testing code by Erik Fasterius <[email protected]> 2019-05-13 11:56:14 +0200;
acbaa49 Shorten line > 80 characters by Erik Fasterius <[email protected]> 2019-05-13 10:52:42 +0200;
d5230dd Add searching for Conda versions to README.md by Erik Fasterius <[email protected]> 2019-05-10 12:40:54 +0200;
e265842 Add Conda installation info to README.md by Erik Fasterius <[email protected]> 2019-05-10 12:37:34 +0200;
0863415 Update README.md formatting by Erik Fasterius <[email protected]> 2019-05-08 08:03:46 +0200;
b683ec6 Update README.md with new functionality by Erik Fasterius <[email protected]> 2019-05-08 08:00:15 +0200;
d454761 Increment to 1.7.1 by Erik Fasterius <[email protected]> 2019-05-07 18:18:36 +0200;
e3ba4f2 Fix spelling errors in NEWS by Erik Fasterius <[email protected]> 2019-05-07 18:06:37 +0200;
e2d3638 Include the FILTER column in profile comparisons by Erik Fasterius <[email protected]> 2019-05-07 17:41:34 +0200;
5a80a09 Refactor `dplyr` code to follow new deprecations by Erik Fasterius <[email protected]> 2019-05-07 17:31:27 +0200;
6211eb2 Update NEWS with new checks by Erik Fasterius <[email protected]> 2019-05-07 10:53:01 +0200;
cd3ac80 Add check for sample in input VCF by Erik Fasterius <[email protected]> 2019-05-07 10:49:01 +0200;
a7bf630 Add a check for zero-variant profiles by Erik Fasterius <[email protected]> 2019-05-07 10:28:29 +0200;
33b37dc Keep FILTER column when creating profiles by Erik Fasterius <[email protected]> 2019-05-07 10:18:16 +0200;