% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/sctkQCUtils.R
 \name{exportSCE}
 \alias{exportSCE}
 \title{Export data in SingleCellExperiment object}
 \usage{
 exportSCE(
   inSCE,
   samplename = "sample",
   directory = "./",
   type = "Cells",

   format = c("SCE", "AnnData", "FlatFile", "HTAN", "Seurat")

 )
 }
 \arguments{

 \item{inSCE}{A \link[SingleCellExperiment]{SingleCellExperiment} object
 that contains the data. QC metrics are stored in colData of the

 singleCellExperiment object.}
 
 \item{samplename}{Sample name. This will be used as name of subdirectories
 and the prefix of flat file output. Default is 'sample'.}
 
 \item{directory}{Output directory. Default is './'.}
 

 \item{type}{Type of data. The type of data stored in SingleCellExperiment object.

 It can be 'Droplets'(raw droplets matrix) or 'Cells' (cells matrix).}
 
 \item{format}{The format of output. It currently supports flat files, rds files

 and python h5 files. It can output multiple formats. Default: c("SCE", "AnnData", "FlatFile", "HTAN").}

 }

 \value{

 Generates a file containing data from \code{inSCE}, in specified \code{format}.

 }

 \description{
 Export data in SingleCellExperiment object
 }

 \examples{
 data(scExample)
 \dontrun{
 exportSCE(sce, format = "SCE")
 }
 }