% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/abundance.R
 \name{getDiffAbundanceResults}
 \alias{getDiffAbundanceResults}
 \alias{getDiffAbundanceResults,SingleCellExperiment-method}
 \alias{getDiffAbundanceResults<-}
 \alias{getDiffAbundanceResults<-,SingleCellExperiment-method}
 \title{Get/Set diffAbundanceFET result table}
 \usage{
 getDiffAbundanceResults(x, analysisName)
 
 \S4method{getDiffAbundanceResults}{SingleCellExperiment}(x, analysisName)
 
 getDiffAbundanceResults(x, analysisName) <- value
 
 \S4method{getDiffAbundanceResults}{SingleCellExperiment}(x, analysisName) <- value
 }
 \arguments{
 \item{x}{A \code{\link[SingleCellExperiment]{SingleCellExperiment}}
 object.}
 
 \item{analysisName}{A single character string specifying an analysis 
 performed with \code{\link{diffAbundanceFET}}}
 
 \item{value}{The output table of \code{\link{diffAbundanceFET}}}
 }
 \value{
 The differential abundance table for getter method, or update the SCE
 object with new result for setter method.
 }
 \description{
 Get/Set diffAbundanceFET result table
 }
 \examples{
 data("mouseBrainSubsetSCE", package = "singleCellTK")
 mouseBrainSubsetSCE <- diffAbundanceFET(inSCE = mouseBrainSubsetSCE,
                                                 cluster = "tissue",
                                                 variable = "level1class",
                                                 case = "oligodendrocytes",
                                                 control = "microglia",
                                                 analysisName = "diffAbund")
 result <- getDiffAbundanceResults(mouseBrainSubsetSCE, "diffAbund")
 }