% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/sctkQCUtils.R
 \name{getSceParams}
 \alias{getSceParams}
 \title{Extract QC parameters from the SingleCellExperiment object}
 \usage{
 getSceParams(
   inSCE,

   skip = c("runScrublet", "runDecontX", "runBarcodeRanksMetaOutput", "genesets",
     "runSoupX"),

   ignore = c("algorithms", "estimates", "contamination", "z", "sample", "rank",

     "BPPARAM", "batch", "geneSetCollection", "barcodeArgs"),

   directory = "./",

   samplename = "",
   writeYAML = TRUE
 )
 }
 \arguments{
 \item{inSCE}{A \link[SingleCellExperiment]{SingleCellExperiment} object.}
 
 \item{skip}{Skip extracting the parameters of the provided QC functions.}
 
 \item{ignore}{Skip extracting the content within QC functions.}
 

 \item{directory}{The output directory of the SCTK_runQC.R pipeline.}
 

 \item{samplename}{The sample name of the \link[SingleCellExperiment]{SingleCellExperiment} objects.}
 

 \item{writeYAML}{Whether output yaml file to store parameters. Default if TRUE. If FALSE,

 return character object.}
 }

 \value{
 If \code{writeYAML} TRUE, a yaml object will be generated. If FALSE, character object.
 }

 \description{
 Extract QC parameters from the SingleCellExperiment object
 }