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YEAR: 2016 |
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-COPYRIGHT HOLDER: David Jenkins and W. Evan Johnson |
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- |
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-The MIT License (MIT) (http://opensource.org/licenses/MIT) |
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- |
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-Permission is hereby granted, free of charge, to any person obtaining a copy of |
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-this software and associated documentation files (the "Software"), to deal in |
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-the Software without restriction, including without limitation the rights to |
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-use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of |
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-the Software, and to permit persons to whom the Software is furnished to do so, |
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-subject to the following conditions: |
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- |
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-The above copyright notice and this permission notice shall be included in all |
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-copies or substantial portions of the Software. |
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- |
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-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR |
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-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS |
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-FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR |
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-COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER |
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-IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN |
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-CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. |
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+COPYRIGHT HOLDER: David Jenkins, W. Evan Johnson, and Joshua D. Campbell |
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@@ -1,7 +1,17 @@ |
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+Changes in Version 2.16.1 (2024-02-12) |
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+================================================================================ |
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+* Fixed decontX/soupX webapp error |
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+* Fixed error in reportCellQC |
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+* Fixed additional bugs with Seurat V5 integration |
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+ |
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+Changes in Version 2.16.0 (2024-10-29) |
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+================================================================================ |
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+* Updated version to match Bioconductor 3.20 |
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+ |
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Changes in Version 2.14.0 (2024-05-03) |
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================================================================================ |
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* Updated version to match Bioconductor 3.19 |
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-* Update runGSVA fucntion to work with newer GSVA package |
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+* Update runGSVA function to work with newer GSVA package |
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Changes in Version 2.12.2 (2024-01-28) |
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================================================================================ |
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@@ -12,7 +12,7 @@ plotSeuratElbow( |
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reduction = "pca", |
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ndims = 20, |
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externalReduction = NULL, |
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- interactive = TRUE |
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+ interactive = FALSE |
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) |
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} |
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\arguments{
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@@ -33,7 +33,7 @@ other libraries. Default \code{NULL}.}
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\item{interactive}{Logical value indicating if the returned object should
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be an interactive plotly object if \code{TRUE} or a ggplot object if
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-set to \code{FALSE}. Default is \code{TRUE}.}
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+set to \code{FALSE}. Default is \code{FALSE}.}
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} |
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\value{
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plot object |
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@@ -58,7 +58,7 @@ test_that(desc = "Testing standard seurat workflow", {
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# Test ElbowPlot on PCA |
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elbowPlot <- plotSeuratElbow(sce) |
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- testthat::expect_true(inherits(elbowPlot, "plotly")) |
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+ testthat::expect_true(is.ggplot(elbowPlot)) |
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# Test Heatmap on PCA |
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heatmapPlot <- runSeuratHeatmap(sce, useAssay = "seuratScaledData", dims = 4, fast = FALSE) |
