1. singleCellTK
  2. man
  3. getMSigDBTable.Rd
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local BiocCheck error fix

Yichen Wang authored on 10/05/2021 22:58:10
Showing 1 changed files
man/getMSigDBTable.Rd
History View file @ 930ec858
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@@ -14,6 +14,9 @@ Returns a data.frame that shows MSigDB categories and
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 subcategories as well as descriptions for each. The entries in the ID
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 column in this table can be used as input for \link{importGeneSetsFromMSigDB}.
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 }
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+\examples{
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+getMSigDBTable()
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+}
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 \seealso{
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 \link{importGeneSetsFromMSigDB} for importing MSigDB gene sets.
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 }
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Merge branch 'master' of github.com:compbiomed/singleCellTK

Yusuke Koga authored on 16/10/2020 00:27:01
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Fix to msigdbr deprecated function

Yusuke Koga authored on 09/10/2020 23:31:44
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man/getMSigDBTable.Rd
History View file @ 44363985
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@@ -7,7 +7,7 @@
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 getMSigDBTable()
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 }
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 \description{
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-Returns a data.frame that shows MSigDB categories and
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+Returns a data.frame that shows MSigDB categories and
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 subcategories as well as descriptions for each. The entries in the ID
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 column in this table can be used as input for \link{importGeneSetsFromMSigDB}.
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 }
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Added functions to subset rows and columns. Also updated some importGeneSet function parameters as well as runPerCellQC to be able to use imported gene sets.

Joshua D. Campbell authored on 02/07/2020 00:55:06
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man/getMSigDBTable.Rd
History View file @ 12e9568f
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@@ -11,6 +11,9 @@ Returns a data.frame that shows MSigDB categories and
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 subcategories as well as descriptions for each. The entries in the ID
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 column in this table can be used as input for \link{importGeneSetsFromMSigDB}.
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 }
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+\seealso{
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+\link{importGeneSetsFromMSigDB} for importing MSigDB gene sets.
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+}
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 \author{
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 Joshua D. Campbell
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 }
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Finished fixing up importGeneSet functions. Modified and moved featureIndex function from Celda to sctk. Added msigdb object and documentation

Joshua D. Campbell authored on 28/06/2020 19:18:31
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man/getMSigDBTable.Rd
History View file @ 70873af9
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new file mode 100644
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@@ -0,0 +1,16 @@
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+% Generated by roxygen2: do not edit by hand
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+% Please edit documentation in R/importGeneSets.R
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+\name{getMSigDBTable}
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+\alias{getMSigDBTable}
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+\title{Shows MSigDB categories}
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+\usage{
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+getMSigDBTable()
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+}
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+\description{
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+Returns a data.frame that shows MSigDB categories and
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+subcategories as well as descriptions for each. The entries in the ID
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+column in this table can be used as input for \link{importGeneSetsFromMSigDB}.
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+}
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+\author{
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+Joshua D. Campbell
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+}