Irzam Sarfraz authored on 05/04/2022 09:46:47
| 1 | 1 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,34 @@ |
| 1 |
+% Generated by roxygen2: do not edit by hand |
|
| 2 |
+% Please edit documentation in R/seuratFunctions.R |
|
| 3 |
+\name{plotSeuratHVG}
|
|
| 4 |
+\alias{plotSeuratHVG}
|
|
| 5 |
+\title{plotSeuratHVG
|
|
| 6 |
+Plot highly variable genes from input sce object (must have highly variable |
|
| 7 |
+genes computations stored)} |
|
| 8 |
+\usage{
|
|
| 9 |
+plotSeuratHVG(inSCE, labelPoints = 0) |
|
| 10 |
+} |
|
| 11 |
+\arguments{
|
|
| 12 |
+\item{inSCE}{(sce) object that contains the highly variable genes
|
|
| 13 |
+computations} |
|
| 14 |
+ |
|
| 15 |
+\item{labelPoints}{Numeric value indicating the number of top genes that
|
|
| 16 |
+should be labeled. |
|
| 17 |
+ Default is \code{0}, which will not label any point.}
|
|
| 18 |
+} |
|
| 19 |
+\value{
|
|
| 20 |
+plot object |
|
| 21 |
+} |
|
| 22 |
+\description{
|
|
| 23 |
+plotSeuratHVG |
|
| 24 |
+Plot highly variable genes from input sce object (must have highly variable |
|
| 25 |
+genes computations stored) |
|
| 26 |
+} |
|
| 27 |
+\examples{
|
|
| 28 |
+data(scExample, package = "singleCellTK") |
|
| 29 |
+\dontrun{
|
|
| 30 |
+sce <- runSeuratNormalizeData(sce, useAssay = "counts") |
|
| 31 |
+sce <- runSeuratFindHVG(sce, useAssay = "counts") |
|
| 32 |
+plotSeuratHVG(sce) |
|
| 33 |
+} |
|
| 34 |
+} |