npervaiz authored on 04/10/2022 16:33:00
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@@ -30,7 +30,6 @@ Scales the input sce object according to the input parameters |
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data(scExample, package = "singleCellTK") |
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\dontrun{
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sce <- runScanpyNormalizeData(sce, useAssay = "counts") |
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-sce <- runScanpyFindHVG(sce, useAssay = "counts") |
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-sce <- runScanpyScaleData(sce, useAssay = "counts") |
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+sce <- runScanpyScaleData(sce, useAssay = "scanpyNormData") |
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} |
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} |
Irzam Sarfraz authored on 04/10/2022 14:16:00
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new file mode 100644 |
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@@ -0,0 +1,36 @@ |
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+% Generated by roxygen2: do not edit by hand |
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+% Please edit documentation in R/scanpyFunctions.R |
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+\name{runScanpyScaleData}
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+\alias{runScanpyScaleData}
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+\title{runScanpyScaleData
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+Scales the input sce object according to the input parameters} |
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+\usage{
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+runScanpyScaleData( |
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+ inSCE, |
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+ useAssay = "scanpyNormData", |
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+ scaledAssayName = "scanpyScaledData" |
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+) |
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+} |
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+\arguments{
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+\item{inSCE}{(sce) object to scale}
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+ |
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+\item{useAssay}{Assay containing normalized counts to scale.}
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+ |
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+\item{scaledAssayName}{Name of new assay containing scaled data. Default
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+\code{scanpyScaledData}.}
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+} |
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+\value{
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+Scaled \code{SingleCellExperiment} object
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+} |
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+\description{
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+runScanpyScaleData |
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+Scales the input sce object according to the input parameters |
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+} |
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+\examples{
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+data(scExample, package = "singleCellTK") |
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+\dontrun{
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+sce <- runScanpyNormalizeData(sce, useAssay = "counts") |
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+sce <- runScanpyFindHVG(sce, useAssay = "counts") |
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+sce <- runScanpyScaleData(sce, useAssay = "counts") |
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+} |
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+} |