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README.md 100644 0 kb
all.urls 100644 1 kb
check.sh 100755 2 kb
clean.sh 100755 0 kb
diff_counts.sh 100755 1 kb
make_test_data.R 100755 1 kb
README.md
This will serve for now for smoke testing the output of `snapcount` against Snaptron directly. It takes ~1m to run (on Stingray at least): `cd external_tests && /bin/bash -x check.sh` Then check the `*.diff` files for any that are not 0-sized. The R script requires the [SummarizedExperiment](https://bioconductor.org/packages/release/bioc/html/SummarizedExperiment.html) package to be installed (via BioConductor) for its `rowRanges` function.