| 1 | 1 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,41 @@ |
| 1 |
+c( |
|
| 2 |
+bibentry( |
|
| 3 |
+ bibtype = "manual", |
|
| 4 |
+ title = "spaSim: Spatial point data simulator for tissue images", |
|
| 5 |
+ author =c( |
|
| 6 |
+ person("Yuzhou", "Feng"),
|
|
| 7 |
+ person("Anna S", "Trigos")
|
|
| 8 |
+ ), |
|
| 9 |
+ note = "R package version 1.3.1", |
|
| 10 |
+ year = "2023", |
|
| 11 |
+ url = "https://trigosteam.github.io/SPIAT/"), |
|
| 12 |
+bibentry( |
|
| 13 |
+ bibtype = "article", |
|
| 14 |
+ title = "Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments", |
|
| 15 |
+ author =c( |
|
| 16 |
+ person("Yuzhou", "Feng"),
|
|
| 17 |
+ person("Tianpei", "Yang"),
|
|
| 18 |
+ person("John", "Zhu"),
|
|
| 19 |
+ person("Mabel", "Li"),
|
|
| 20 |
+ person("Maria", "Doyle"),
|
|
| 21 |
+ person("Volkan", "Ozcoban"),
|
|
| 22 |
+ person("Greg T", "Bass"),
|
|
| 23 |
+ person("Angela", "Pizzolla"),
|
|
| 24 |
+ person("Lachlan", "Cain"),
|
|
| 25 |
+ person("Sirui", "Weng"),
|
|
| 26 |
+ person("Anupama", "Pasam"),
|
|
| 27 |
+ person("Nikolce", "Kocovski"),
|
|
| 28 |
+ person("Yu-Kuan", "Huang"),
|
|
| 29 |
+ person("Simon P", "Keam"),
|
|
| 30 |
+ person("Terence P", "Speed"),
|
|
| 31 |
+ person("Paul J", "Neeson"),
|
|
| 32 |
+ person("Richard B", "Pearson"),
|
|
| 33 |
+ person("Shahneen K", "Sandhu"),
|
|
| 34 |
+ person("David L", "Goode"),
|
|
| 35 |
+ person("Anna S", "Trigos")
|
|
| 36 |
+ ), |
|
| 37 |
+ journal = "Nature Communications", |
|
| 38 |
+ volume = "14", |
|
| 39 |
+ number = "2697", |
|
| 40 |
+ year = "2023", |
|
| 41 |
+ doi = "10.1038/s41467-023-37822-0")) |
| ... | ... |
@@ -1,7 +1,7 @@ |
| 1 | 1 |
Package: spaSim |
| 2 | 2 |
Title: Spatial point data simulator for tissue images |
| 3 |
-Version: 1.1.2 |
|
| 4 |
-Date: 2022-04-26 |
|
| 3 |
+Version: 1.3.1 |
|
| 4 |
+Date: 2023-05-22 |
|
| 5 | 5 |
Authors@R: |
| 6 | 6 |
c(person("Yuzhou", "Feng", email = "[email protected]", role = c("aut", "cre"),
|
| 7 | 7 |
comment = c(ORCID = "0000-0002-2955-4053")), |
| ... | ... |
@@ -65,3 +65,8 @@ mix_background <- TIS(n_cells = 5000, width = 2000, height = 2000, |
| 65 | 65 |
|
| 66 | 66 |
## Creators |
| 67 | 67 |
spaSim was created, designed and implemented by Yuzhou Feng. Anna Trigos provided supervision and guidance. |
| 68 |
+ |
|
| 69 |
+## Paper reference |
|
| 70 |
+Please check our latest paper for more information! |
|
| 71 |
+ |
|
| 72 |
+Yuzhou Feng et al, Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments, Nature Communications (2023). DOI: 10.1038/s41467-023-37822-0 |
| ... | ... |
@@ -64,3 +64,11 @@ mix_background <- TIS(n_cells = 5000, width = 2000, height = 2000, |
| 64 | 64 |
|
| 65 | 65 |
spaSim was created, designed and implemented by Yuzhou Feng. Anna Trigos |
| 66 | 66 |
provided supervision and guidance. |
| 67 |
+ |
|
| 68 |
+## Paper reference |
|
| 69 |
+ |
|
| 70 |
+Please check our latest paper for more information! |
|
| 71 |
+ |
|
| 72 |
+Yuzhou Feng et al, Spatial analysis with SPIAT and spaSim to |
|
| 73 |
+characterize and simulate tissue microenvironments, Nature |
|
| 74 |
+Communications (2023). DOI: 10.1038/s41467-023-37822-0 |
