@@ -9,3 +9,4 @@

 ^\.BBSoptions$

 ^doc$

 ^Meta$

+^codecov\.yml$

@@ -29,7 +29,8 @@ Suggests:

     BiocStyle,

     rmarkdown,

     ggplot2,

-    testthat (>= 3.0.0)

+    testthat (>= 3.0.0),

+    covr

 VignetteBuilder: knitr

 biocViews:

     Software,

@@ -18,6 +18,7 @@ knitr::opts_chunk$set(

 <!-- badges: start -->

 [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental)

 [![R-CMD-check-bioc](https://github.com/sales-lab/spatialDE/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/sales-lab/spatialDE/actions)

+[![Codecov test coverage](https://codecov.io/gh/sales-lab/spatialDE/branch/main/graph/badge.svg)](https://codecov.io/gh/sales-lab/spatialDE?branch=main)

 <!-- badges: end -->

 The **spatialDE** package provides an R wrapper for the Python SpatialDE library,

@@ -8,6 +8,8 @@

 [![Lifecycle:

 experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://www.tidyverse.org/lifecycle/#experimental)

 [![R-CMD-check-bioc](https://github.com/sales-lab/spatialDE/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/sales-lab/spatialDE/actions)

+[![Codecov test

+coverage](https://codecov.io/gh/sales-lab/spatialDE/branch/main/graph/badge.svg)](https://codecov.io/gh/sales-lab/spatialDE?branch=main)

 <!-- badges: end -->

 The **spatialDE** package provides an R wrapper for the Python SpatialDE

new file mode 100644

@@ -0,0 +1,14 @@

+comment: false

+

+coverage:

+  status:

+    project:

+      default:

+        target: auto

+        threshold: 1%

+        informational: true

+    patch:

+      default:

+        target: auto

+        threshold: 1%

+        informational: true