% Generated by roxygen2: do not edit by hand % Please edit documentation in R/glog_class.R \name{glog_opt_plot} \alias{glog_opt_plot} \title{Glog optimisation} \usage{ glog_opt_plot(plot_grid = 100, ...) } \arguments{ \item{plot_grid}{(numeric) The default is \code{100}.\cr} \item{...}{Additional slots and values passed to \code{struct_class}.} } \value{ A \code{ glog_opt_plot } object. This object has no \code{output} slots. See \code{\link[struct]{chart_plot}} in the \code{struct} package to plot this chart object. } \description{ A plot of the sum of squares error (SSE) vs different values of lambda for the glog transform. The indicated optimum value for lambda minimises the SSE. } \details{ This object makes use of functionality from the following packages:\itemize{ \item{\code{pmp}}} } \section{Inheritance}{ A \code{glog_opt_plot} object inherits the following \code{struct} classes: \cr\cr \verb{[glog_opt_plot]} >> \verb{[chart]} >> \verb{[struct_class]} } \examples{ M = glog_opt_plot( plot_grid = numeric(0)) D = iris_DatasetExperiment() M = glog_transform(qc_label='versicolor',factor_name='Species') M = model_apply(M,D) C = glog_opt_plot() chart_plot(C,M,D) } \references{ Jankevics A, Lloyd GR, Weber RJM (????). \emph{pmp: Peak Matrix Processing and signal batch correction for metabolomics datasets}. R package version 1.15.1. }