Package: structToolbox
Type: Package
Title: Some tools bult using the struct package
Version: 0.1.0
Author: Gavin Rhys Lloyd
Maintainer: Gavin Rhys Lloyd <[email protected]>
Description: Extends the class templates provided by the struct package to provide methods for training PCA, PLS models with cross-validation, permutation testing etc.
License: GPL-3
Encoding: UTF-8
LazyData: true
Collate:
 'anova_class.R'
 'HSD_class.R'
 'mixed_effect_class.R'
 'HSDEM_class.R'
 'PCA_class.R'
 'PCA_plotfcns.R'
 'PLSDA_class.R'
 'PLSDA_charts.R'
 'fold_change_class.R'
 'PLSFC_class.R'
 'PLSR_class.R'
 'autoscale_class.R'
 'balanced_accuracy_class.R'
 'blank_filter_class.R'
 'classical_lsq_class.R'
 'confounders_clsq_class.R'
 'd_ratio_filter_class.R'
 'dataset_chart_classes.R'
 'factor_barchart_class.R'
 'filter_by_name_class.R'
 'filter_na_count.R'
 'filter_smeta_class.R'
 'fisher_exact_class.R'
 'fold_change_int_class.R'
 'forward_selection_by_rank_class.R'
 'ggplot_theme_pub.R'
 'glog_class.R'
 'grid_search_1d_class.R'
 'hca_class.R'
 'kfold_xval_class.R'
 'kfold_xval_charts.R'
 'knn_impute_class.R'
 'kw_rank_sum_class.R'
 'linear_model_class.R'
 'log_transform.R'
 'mean_centre_class.R'
 'mv_feature_filter_class.R'
 'mv_sample_filter_class.R'
 'permutation_test_class.R'
 'permute_sample_order_class.R'
 'pqn_norm_method_class.R'
 'prop_na_class.R'
 'r_squared_class.R'
 'rsd_filter.R'
 'sbcms_dataset_class.R'
 'split_data_class.R'
 'structToolbox.R'
 'tSNE_class.R'
 'ttest_class.R'
 'vec_norm_class.R'
 'wilcox_test_class.R'
Depends: struct
Imports: ggplot2,
 pmp,
 gridExtra,
 pls,
 sp,
 scales,
 stats,
 methods,
 car,
 grid,
 reshape2,
 agricolae,
 emmeans,
 nlme,
 ggthemes,
 ggdendro,
 Rtsne
RoxygenNote: 6.1.1
Suggests: 
 testthat,
 covr,
 knitr,
 rmarkdown
Remotes: computational-metabolomics/pmp,
  computational-metabolomics/struct
VignetteBuilder: knitr
biocViews: WorkflowStep