Name Mode Size
..
ANOVA.Rd 100644 1 kb
DatasetExperiment_boxplot.Rd 100644 1 kb
DatasetExperiment_dist.Rd 100644 1 kb
DatasetExperiment_factor_barchart.Rd 100644 1 kb
DatasetExperiment_heatmap.Rd 100644 1 kb
HCA.Rd 100644 1 kb
HSD.Rd 100644 1 kb
HSDEM.Rd 100644 1 kb
MTBLS79_DatasetExperiment.Rd 100644 2 kb
PCA.Rd 100644 1 kb
PLSDA.Rd 100644 1 kb
PLSR.Rd 100644 1 kb
as_data_frame.Rd 100644 1 kb
autoscale.Rd 100644 1 kb
balanced_accuracy.Rd 100644 1 kb
blank_filter.Rd 100644 1 kb
blank_filter_hist.Rd 100644 0 kb
bootstrap.Rd 100644 1 kb
calculate.Rd 100644 1 kb
chart_plot.Rd 100644 6 kb
classical_lsq.Rd 100644 1 kb
compare_dist.Rd 100644 1 kb
confounders_clsq.Rd 100644 2 kb
confounders_lsq_barchart.Rd 100644 1 kb
confounders_lsq_boxplot.Rd 100644 1 kb
corr_coef.Rd 100644 1 kb
dratio_filter.Rd 100644 1 kb
feature_boxplot.Rd 100644 1 kb
feature_profile.Rd 100644 1 kb
filter_by_name.Rd 100644 1 kb
filter_na_count.Rd 100644 1 kb
filter_smeta.Rd 100644 1 kb
fisher_exact.Rd 100644 1 kb
fold_change.Rd 100644 1 kb
fold_change_int.Rd 100644 1 kb
fold_change_plot.Rd 100644 1 kb
forward_selection_byrank.Rd 100644 2 kb
fs_line.Rd 100644 1 kb
glog_opt_plot.Rd 100644 1 kb
glog_transform.Rd 100644 1 kb
grid_search_1d.Rd 100644 1 kb
gs_line.Rd 100644 0 kb
hca_dendrogram.Rd 100644 0 kb
kfold_xval.Rd 100644 1 kb
kfoldxcv_grid.Rd 100644 1 kb
kfoldxcv_metric.Rd 100644 0 kb
knn_impute.Rd 100644 1 kb
kw_p_hist.Rd 100644 0 kb
kw_rank_sum.Rd 100644 1 kb
linear_model.Rd 100644 1 kb
log_transform.Rd 100644 0 kb
mean_centre.Rd 100644 1 kb
mixed_effect.Rd 100644 1 kb
model_apply.Rd 100644 4 kb
model_predict.Rd 100644 3 kb
model_reverse.Rd 100644 1 kb
model_train.Rd 100644 3 kb
mv_boxplot.Rd 100644 1 kb
mv_feature_filter.Rd 100644 1 kb
mv_feature_filter_hist.Rd 100644 0 kb
mv_histogram.Rd 100644 1 kb
mv_sample_filter.Rd 100644 1 kb
mv_sample_filter_hist.Rd 100644 0 kb
pairs_filter.Rd 100644 1 kb
pareto_scale.Rd 100644 1 kb
pca_biplot_plot.Rd 100644 1 kb
pca_correlation_plot.Rd 100644 1 kb
pca_dstat_plot.Rd 100644 1 kb
pca_loadings_plot.Rd 100644 1 kb
pca_scores_plot.Rd 100644 1 kb
pca_scree_plot.Rd 100644 0 kb
permutation_test.Rd 100644 1 kb
permutation_test_boxplot.Rd 100644 0 kb
permutation_test_hist.Rd 100644 0 kb
permutation_test_scatter.Rd 100644 0 kb
permutation_test_violin.Rd 100644 0 kb
permute_sample_order.Rd 100644 1 kb
plsda_scores_plot.Rd 100644 1 kb
plsr_cook_dist.Rd 100644 1 kb
plsr_prediction_plot.Rd 100644 0 kb
plsr_qq_plot.Rd 100644 0 kb
plsr_residual_hist.Rd 100644 0 kb
pqn_norm.Rd 100644 1 kb
pqn_norm_hist.Rd 100644 0 kb
prop_na.Rd 100644 1 kb
r_squared.Rd 100644 0 kb
rsd_filter.Rd 100644 1 kb
rsd_filter_hist.Rd 100644 0 kb
run.Rd 100644 2 kb
sb_corr.Rd 100644 1 kb
split_data.Rd 100644 0 kb
structToolbox.Rd 100644 0 kb
tSNE.Rd 100644 1 kb
tSNE_scatter.Rd 100644 0 kb
ttest.Rd 100644 1 kb
vec_norm.Rd 100644 0 kb
wilcox_p_hist.Rd 100644 0 kb
wilcox_test.Rd 100644 1 kb
README.rst
============================================== STRUCT Toolbox ============================================== |Git| |Bioconda| |Build Status (Travis)| |License| |Coverage| |AppVeyor| |mybinder| ------------ Install ------------ Github ------------ .. code-block:: r library(devtools) library(testthat) install_github('computational-metabolomics/structToolbox') Conda ------------ .. code-block:: command conda create -n structtoolbox bioconductor-structtoolbox -c conda-forge -c bioconda -c computational-metabolomics source activate structtoolbox ------------ References ------------ .. |Build Status (Travis)| image:: https://img.shields.io/travis/computational-metabolomics/structToolbox/master.svg?label=Travis :target: https://travis-ci.org/computational-metabolomics/structToolbox .. |Build Status (AppVeyor)| image:: https://ci.appveyor.com/api/projects/status/github/computational-metabolomics/structToolbox?branch=master&svg=true :target: https://ci.appveyor.com/project/computational-metabolomcis/structToolbox .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600 :target: https://github.com/computational-metabolomics/structToolbox .. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat&maxAge=3600 :target: https://bioconda.github.io/recipes/bioconductor-structtoolbox/README.html .. |License| image:: https://img.shields.io/badge/licence-GNU_v3-teal.svg?style=flat&maxAge=3600 :target: https://www.gnu.org/licenses/gpl-3.0.html .. |Coverage| image:: https://codecov.io/gh/computational-metabolomics/structToolbox/branch/master/graph/badge.svg :target: https://codecov.io/gh/computational-metabolomics/structToolbox .. |AppVeyor| image:: https://ci.appveyor.com/api/projects/status/github/computational-metabolomics/structToolbox?branch=master&svg=true :target: https://ci.appveyor.com/project/RJMW/structToolbox .. |mybinder| image:: https://mybinder.org/badge_logo.svg :target: https://mybinder.org/v2/gh/computational-metabolomics/structToolbox/master?filepath=notebooks