Name Mode Size
..
AUC_metric_class.R 100644 2 kb
DFA_class.R 100644 13 kb
HSDEM_class.R 100644 5 kb
HSD_class.R 100644 7 kb
MTBLS79_dataset_class.R 100644 2 kb
PCA_class.R 100644 4 kb
PCA_plotfcns.R 100644 26 kb
PLSDA_charts.R 100644 14 kb
PLSDA_class.R 100644 9 kb
PLSR_class.R 100644 10 kb
anova_class.R 100644 5 kb
as_data_frame_doc.R 100644 0 kb
autoscale_class.R 100644 4 kb
balanced_accuracy_class.R 100644 1 kb
blank_filter_class.R 100644 6 kb
bootstrap_class.R 100644 3 kb
calculate_doc.R 100644 0 kb
chart_plot_doc.R 100644 0 kb
classical_lsq_class.R 100644 6 kb
confounders_clsq_class.R 100644 12 kb
constant_sum_norm_class.R 100644 3 kb
corr_coef_class.R 100644 3 kb
d_ratio_filter_class.R 100644 3 kb
dataset_chart_classes.R 100644 25 kb
entity_objects.R 100644 2 kb
factor_barchart_class.R 100644 5 kb
feature_profile_class.R 100644 4 kb
filter_by_name_class.R 100644 4 kb
filter_na_count.R 100644 4 kb
filter_smeta_class.R 100644 3 kb
fisher_exact_class.R 100644 3 kb
fold_change_class.R 100644 9 kb
fold_change_int_class.R 100644 3 kb
forward_selection_by_rank_class.R 100644 9 kb
ggplot_theme_pub.R 100644 3 kb
glog_class.R 100644 5 kb
grid_search_1d_class.R 100644 8 kb
hca_class.R 100644 5 kb
kfold_xval_charts.R 100644 5 kb
kfold_xval_class.R 100644 5 kb
knn_impute_class.R 100644 3 kb
kw_rank_sum_class.R 100644 6 kb
linear_model_class.R 100644 4 kb
log_transform.R 100644 2 kb
mean_centre_class.R 100644 4 kb
mean_of_medians.R 100644 2 kb
mixed_effect_class.R 100644 5 kb
model_apply_doc.R 100644 0 kb
model_predict_doc.R 100644 0 kb
model_reverse_doc.R 100644 0 kb
model_train_doc.R 100644 0 kb
mv_feature_filter_class.R 100644 6 kb
mv_sample_filter_class.R 100644 4 kb
nroot_transform_class.R 100644 2 kb
pairs_filter_class.R 100644 3 kb
paretoscale_class.R 100644 2 kb
permutation_test_class.R 100644 9 kb
permute_sample_order_class.R 100644 4 kb
pqn_norm_method_class.R 100644 3 kb
prop_na_class.R 100644 4 kb
r_squared_class.R 100644 1 kb
rsd_filter.R 100644 5 kb
run_doc.R 100644 1 kb
sb_corr.R 100644 5 kb
split_data_class.R 100644 3 kb
stratified_split_class.R 100644 3 kb
structToolbox.R 100644 0 kb
svm_classifier_class.R 100644 9 kb
sysdata.rda 100644 2,616 kb
tSNE_class.R 100644 4 kb
ttest_class.R 100644 9 kb
vec_norm_class.R 100644 2 kb
wilcox_test_class.R 100644 9 kb
zzz.R 100644 0 kb
README.rst
============================================== STRUCT Toolbox ============================================== |Git| |Bioconda| |Build Status (Travis)| |License| |Coverage| |AppVeyor| |mybinder| ------------ Install ------------ Github ------------ .. code-block:: r library(devtools) library(testthat) install_github('computational-metabolomics/structToolbox') Conda ------------ .. code-block:: command conda create -n structtoolbox bioconductor-structtoolbox -c conda-forge -c bioconda -c computational-metabolomics source activate structtoolbox ------------ References ------------ .. |Build Status (Travis)| image:: https://img.shields.io/travis/computational-metabolomics/structToolbox/master.svg?label=Travis :target: https://travis-ci.org/computational-metabolomics/structToolbox .. |Build Status (AppVeyor)| image:: https://ci.appveyor.com/api/projects/status/github/computational-metabolomics/structToolbox?branch=master&svg=true :target: https://ci.appveyor.com/project/computational-metabolomcis/structToolbox .. |Git| image:: https://img.shields.io/badge/repository-GitHub-blue.svg?style=flat&maxAge=3600 :target: https://github.com/computational-metabolomics/structToolbox .. |Bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat&maxAge=3600 :target: https://bioconda.github.io/recipes/bioconductor-structtoolbox/README.html .. |License| image:: https://img.shields.io/badge/licence-GNU_v3-teal.svg?style=flat&maxAge=3600 :target: https://www.gnu.org/licenses/gpl-3.0.html .. |Coverage| image:: https://codecov.io/gh/computational-metabolomics/structToolbox/branch/master/graph/badge.svg :target: https://codecov.io/gh/computational-metabolomics/structToolbox .. |AppVeyor| image:: https://ci.appveyor.com/api/projects/status/github/computational-metabolomics/structToolbox?branch=master&svg=true :target: https://ci.appveyor.com/project/RJMW/structToolbox .. |mybinder| image:: https://mybinder.org/badge_logo.svg :target: https://mybinder.org/v2/gh/computational-metabolomics/structToolbox/master?filepath=notebooks