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@@ -1,4 +1,4 @@
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-FROM rocker/shiny:4.2.2
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+FROM rocker/shiny:4.4.2
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LABEL maintainer="Veit Schwaemmle <[email protected]>"
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LABEL description="Docker image of VSClust implementation on top of shiny-server. The number of to-be-installed R packages requires patience when building this image."
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@@ -9,7 +9,7 @@ RUN R -e "install.packages(c('BiocManager','remotes'), repos='http://cran.us.r-p
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update.packages(ask=F);"
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# BiocManager::install(c('BiocManager', 'devtools', 'RJDBC', 'dplyr', 'plotly', 'RPostgreSQL','rJava', 'lubridate', 'DT'),ask=F)"
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-RUN R -e "BiocManager::install('veitveit/vsclust')"
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+RUN R -e "BiocManager::install('computproteomics/vsclust')"
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RUN R -e "library(BiocManager); BiocManager::install(c('genefilter', 'Rcpp', 'clusterProfiler','qvalue','limma','matrixStats','yaml','shinyjs','shinythemes','graph', 'GOstats', 'Category', 'RBGL',\
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'DT', 'RJDBC','dplyr','plotly','RPostgreSQL','lubridate'),ask=F, force=T)"
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RUN R -e "install.packages('rJava')"
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