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Open Source Better Science
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Open Source Better Science
896 followers · 573 following

Achievements

Achievement: Pair ExtraordinaireAchievement: Galaxy BrainAchievement: Starstruckx2Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair ExtraordinaireAchievement: Galaxy BrainAchievement: Starstruckx2Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@ropensci @conda-forge @openbiox @OncoHarmony-Network @Traitome

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ShixiangWang/README.md

Dr. Shixiang Wang | Associate Professor at CSU

Leader of Laboratory of In Silico Oncology and Medicine, and

co-leadership of OncoHarmony Network with Prof. Jian-Guo Zhou.

About

🔬 Research Focus: Bioinformatics · Cancer Genomics · Multi-omics Analysis
🛠️ Development: Developer specializing in open-source tools for reproducible bioinformatics
🎯 Mission: Building accessible workflows and packages for clinical and research bioinformatics

Resources & Links:

Featured Projects

🌟 UCSCXenaShiny — Interactive Shiny app for exploring UCSC Xena datasets
🔧 UCSCXenaTools — R toolkit to access and manipulate UCSC Xena data
⚗️ bregr — Selected research software from WangLab @ CSU
📰 weekly — Openbiox Weekly: curated bioinformatics news and resources
🎓 Tech-Workshop — OncoHarmony Network workshops and teaching materials

Connect with Me

💬 Discussion & Support: GitHub Discussions | Email

bilibili wechat zhihu twitter scholar

GitHub Stats

🐱 My GitHub Data

📦 5.0 MB Used in GitHub's Storage

🏆 1,721 Contributions in the Year 2026

🚫 Not Opted to Hire

📜 100 Public Repositories

🔑 31 Private Repositories

I'm an Early 🐤

🌞 Morning                4080 commits        ████░░░░░░░░░░░░░░░░░░░░░   16.56 % 
🌆 Daytime                9981 commits        ██████████░░░░░░░░░░░░░░░   40.52 % 
🌃 Evening                8558 commits        █████████░░░░░░░░░░░░░░░░   34.74 % 
🌙 Night                  2014 commits        ██░░░░░░░░░░░░░░░░░░░░░░░   08.18 %

📅 I'm Most Productive on Wednesday

Monday                   3757 commits        ████░░░░░░░░░░░░░░░░░░░░░   15.25 % 
Tuesday                  4161 commits        ████░░░░░░░░░░░░░░░░░░░░░   16.89 % 
Wednesday                4225 commits        ████░░░░░░░░░░░░░░░░░░░░░   17.15 % 
Thursday                 3895 commits        ████░░░░░░░░░░░░░░░░░░░░░   15.81 % 
Friday                   3993 commits        ████░░░░░░░░░░░░░░░░░░░░░   16.21 % 
Saturday                 1965 commits        ██░░░░░░░░░░░░░░░░░░░░░░░   07.98 % 
Sunday                   2637 commits        ███░░░░░░░░░░░░░░░░░░░░░░   10.71 %

I Mostly Code in R

R                        95 repos            ████████████░░░░░░░░░░░░░   48.97 % 
Python                   13 repos            ██░░░░░░░░░░░░░░░░░░░░░░░   06.70 % 
Rust                     10 repos            █░░░░░░░░░░░░░░░░░░░░░░░░   05.15 % 
SCSS                     5 repos             █░░░░░░░░░░░░░░░░░░░░░░░░   02.58 % 
TypeScript               3 repos             ░░░░░░░░░░░░░░░░░░░░░░░░░   01.55 %

Last Updated on 06/07/2026 20:50:11 UTC

These Readme stats are generated using github action awesome-readme-stats

NOTE: Top languages does not indicate my skill level or anything like that. It is just a metric of which languages have been hosted by me on GitHub based on the usage across repositories.

Pinned Loading

  1. sigminer sigminer Public

    🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

    R 162 20

  2. openbiox/weekly openbiox/weekly Public

    生信爱好者周刊（每周日发布）

    HTML 458 30

  3. ropensci/UCSCXenaTools ropensci/UCSCXenaTools Public

    📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/

    R 117 14

  4. openbiox/UCSCXenaShiny openbiox/UCSCXenaShiny Public

    📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny_Book; App online: https://shiny.zhoulab.ac.cn/UCSCXenaShiny,…

    R 104 32

  5. openbiox/Cookbook-for-R-Chinese openbiox/Cookbook-for-R-Chinese Public

    📚Cookbook for R 中文翻译

    TeX 143 68

  6. pybook pybook Public

    《交互的Python：数据分析入门》

    134 16