About WikiPathways

• WikiPathways is a community-curated biological pathway knowledgebase covering metabolic, signaling, and disease-related pathways. It provides open APIs for pathway search and content retrieval (e.g., GPML/JSON), commonly used for enrichment, visualization, and mechanism studies.

Run:

python examples/pathways/wikipathways/use_wikipathways.py

What it does:

• WikiPathways_search: text search for pathways
• WikiPathways_get_pathway: fetch a pathway content by WPID

Notes:

• Use a known WPID from search results to ensure retrieval.