Results for 'bio-ontologies'

983 found
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  1. Wanting what we don't want to want: Representing Addiction in Interoperable Bio-Ontologies.Janna Hastings, Nicolas Le Novère, Werner Ceusters, Kevin Mulligan & Barry Smith - 2012 - In Janna Hastings, Werner Ceusters, Mark Jensen, Kevin Mulligan & Barry Smith, Towards an Ontology of Mental Functioning (ICBO Workshop). CEUR. pp. 56-60.
    Ontologies are being developed throughout the biomedical sciences to address standardization, integration, classification and reasoning needs against the background of an increasingly data-driven research paradigm. In particular, ontologies facilitate the translation of basic research into benefits for the patient by making research results more discoverable and by facilitating knowledge transfer across disciplinary boundaries. Addressing and adequately treating mental illness is one of our most pressing public health challenges. Primary research across multiple disciplines such as psychology, psychiatry, biology, neuroscience (...)
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  2. Ontologies as Integrative Tools for Plant Science.Ramona Walls, Balaji Athreya, Laurel Cooper, Justin Elser, Maria A. Gandolfo, Pankaj Jaiswal, Christopher J. Mungall, Justin Preece, Stefan Rensing, Barry Smith & Dennis W. Stevenson - 2012 - American Journal of Botany 99 (8):1263–1275.
    Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of the Semantic Web. This paper provides background on what bio-ontologies are, why they are relevant to botany, and the principles of ontology development. It includes an overview of ontologies and related resources that are (...)
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  3. Ontologies for the life sciences.Steffen Schulze-Kremer & Barry Smith - 2005 - In Schulze-Kremer Steffen & Smith Barry, Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, vol. 4. Wiley.
    Where humans can manipulate and integrate the information they receive in subtle and ever-changing ways from context to context, computers need structured and context-free background information of a sort which ontologies can help to provide. A domain ontology captures the stable, highly general and commonly accepted core knowledge for an application domain. The domain at issue here is that of the life sciences, in particular molecular biology and bioinformatics. Contemporary life science research includes components drawn from physics, chemistry, mathematics, (...)
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  4. Protein Ontology: A controlled structured network of protein entities.A. Natale Darren, N. Arighi Cecilia, A. Blake Judith, J. Bult Carol, R. Christie Karen, Cowart Julie, D’Eustachio Peter, D. Diehl Alexander, J. Drabkin Harold, Helfer Olivia, Barry Smith & Others - 2013 - Nucleic Acids Research 42 (1):D415-21..
    The Protein Ontology (PRO; http://proconsortium.org) formally defines protein entities and explicitly represents their major forms and interrelations. Protein entities represented in PRO corresponding to single amino acid chains are categorized by level of specificity into family, gene, sequence and modification metaclasses, and there is a separate metaclass for protein complexes. All metaclasses also have organism-specific derivatives. PRO complements established sequence databases such as UniProtKB, and interoperates with other biomedical and biological ontologies such as the Gene Ontology (GO). PRO relates (...)
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  5. Ontologies of cellular networks.Arp Robert & Barry Smith - 2008 - Science Signalling 1 (50):1--3.
    A comparison of six alternative definitions of the term 'cellular pathway' against the background of ontological realism.
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  6. Bio-power and bio-policy: Anthropological and socio-political dimensions of techno-humanitarian balance.V. Cheshko & O. Kuss - 2016 - Hyleya 107 (4):267-272.
    The sociobiological and socio-political aspects of human existence have been the subject of techno-rationalistic control and manipulation. The investigation of the mutual complementarity of anthropological and ontological paradigms under these circumstances is the main purpose of present publication. The comparative conceptual analysis of the bio-power and bio-politics in the mentality of the modern technological civilization is a main method of the research. The methodological and philosophical analogy of biological and social engineering allows combining them in the nature and social implications (...)
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  7. Transbiopolitics: Ontology and Metatheory of Managed Evolution.Valentin Cheshko & Kuz Oleh - 2021 - Epistemological studies in Philosophy, Social and Political Sciences 4 (1):1-11.
    Applied technological developments are represented by (1) genetic engineering as management tools of biological evolution and (2) socio-economic engineering as management tools of civilizational and socio-cultural development. This binary structure logically follows from the postulated three-module organization of the sustainable evolutionary strategy of the sentient human being. Naturphilosophy once again acquires the status of the basis of the theory of evolution in an explicit way. There is a system of metaphysical postulates and ontological categories derived from the anthropic principle of (...)
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  8. A Relational Ontology of Consciousness: Reflexive Closure and the Material Basis of Awareness.Benjamin Owino - manuscript
    Contemporary theories of consciousness—global workspace, higher-order, integrated information, recurrent processing, and predictive processing frameworks—illuminate important functional and informational distinctions among neural states. Yet they leave unresolved what the philosophical literature identifies as the hard problem or explanatory gap: how any physical process becomes present to itself. These theories successfully address the difference question (why some states of a system are conscious) but presuppose, without explaining, the more fundamental genesis question: how a standpoint from which states can appear arises at all. (...)
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  9. Ontology-based integration of medical coding systems and electronic patient records.W. Ceusters, Barry Smith & G. De Moor - 2004 - IFOMIS Reports.
    In the last two decades we have witnessed considerable efforts directed towards making electronic healthcare records comparable and interoperable through advances in record architectures and (bio)medical terminologies and coding systems. Deep semantic issues in general, and ontology in particular, have received some interest from the research communities. However, with the exception of work on so-called ‘controlled vocabularies’, ontology has thus far played little role in work on standardization. The prime focus has been rather the rapid population of terminologies at the (...)
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  10. TGF-beta signaling proteins and the Protein Ontology.Arighi Cecilia, Liu Hongfang, Natale Darren, Barker Winona, Drabkin Harold, Blake Judith, Barry Smith & Wu Cathy - 2009 - BMC Bioinformatics 10 (Suppl 5):S3.
    The Protein Ontology (PRO) is designed as a formal and principled Open Biomedical Ontologies (OBO) Foundry ontology for proteins. The components of PRO extend from a classification of proteins on the basis of evolutionary relationships at the homeomorphic level to the representation of the multiple protein forms of a gene, including those resulting from alternative splicing, cleavage and/or posttranslational modifications. Focusing specifically on the TGF-beta signaling proteins, we describe the building, curation, usage and dissemination of PRO. PRO provides a (...)
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  11. The development of non-coding RNA ontology.Jingshan Huang, Karen Eilbeck, Barry Smith, Judith Blake, Deijing Dou, Weili Huang, Darren Natale, Alan Ruttenberg, Jun Huan, Michael Zimmermann, Guoqian Jiang, Yu Lin, Bin Wu, Harrison Strachan, Nisansa de Silva & Mohan Vamsi Kasukurthi - 2016 - International Journal of Data Mining and Bioinformatics 15 (3):214--232.
    Identification of non-coding RNAs (ncRNAs) has been significantly improved over the past decade. On the other hand, semantic annotation of ncRNA data is facing critical challenges due to the lack of a comprehensive ontology to serve as common data elements and data exchange standards in the field. We developed the Non-Coding RNA Ontology (NCRO) to handle this situation. By providing a formally defined ncRNA controlled vocabulary, the NCRO aims to fill a specific and highly needed niche in semantic annotation of (...)
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  12. The Plant Ontology: A common reference ontology for plants.L. Walls Ramona, D. Cooper Laurel, Elser Justin, W. Stevenson Dennis, Barry Smith, Mungall Chris, A. Gandolfo Maria & Jaiswal Pankaj - 2010 - In Walls Ramona L., Cooper Laurel D., Justin Elser, Stevenson Dennis W., Smith Barry, Chris Mungall, Gandolfo Maria A. & Pankaj Jaiswal, Proceedings of the Workshop on Bio-Ontologies, ISMB, Boston, July, 2010.
    The Plant Ontology (PO) (http://www.plantontology.org) (Jaiswal et al., 2005; Avraham et al., 2008) was designed to facilitate cross-database querying and to foster consistent use of plant-specific terminology in annotation. As new data are generated from the ever-expanding list of plant genome projects, the need for a consistent, cross-taxon vocabulary has grown. To meet this need, the PO is being expanded to represent all plants. This is the first ontology designed to encompass anatomical structures as well as growth and developmental stages (...)
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  13. Metabolism Instead of Machine: Towards an Ontology of Hybrids.Julia Rijssenbeek, Vincent Blok & Zoë Robaey - 2022 - Philosophy and Technology 35 (3):1-23.
    The emerging field of synthetic biology aims to engineer novel biological entities. The envisioned future bio-based economy builds largely on “cell factories”: organisms that have been metabolically engineered to sustainably produce substances for human ends. In this paper, we argue that synthetic biology’s goal of creating efficient production vessels for industrial applications implies a set of ontological assumptions according to which living organisms are machines. Traditionally, a machine is understood as a technological, isolated and controllable production unit consisting of parts. (...)
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  14. Vital Sign Ontology.Albert Goldfain, Barry Smith, Sivaram Arabandi, Mathias Brochhausen & William R. Hogan - 2011 - In Goldfain Albert, Smith Barry, Arabandi Sivaram, Brochhausen Mathias & Hogan William R., Proceedings of the Workshop on Bio-Ontologies, ISMB, Vienna, June 2011. pp. 71-74.
    We introduce the Vital Sign Ontology (VSO), an extension of the Ontology for General Medical Science (OGMS) that covers the consensus human vital signs: blood pressure, body temperature, respiratory rate, and pulse rate. VSO provides a controlled structured vocabulary for describing vital sign measurement data, the processes of measuring vital signs, and the anatomical entities participating in such measurements. VSO is implemented in OWL-DL and follows OBO Foundry guidelines and best practices. If properly developed and extended, we believe the VSO (...)
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  15. Function, role and disposition in Basic Formal Ontology.Robert Arp & Barry Smith - 2008 - Proceedings of Bio-Ontologies Workshop, Intelligent Systems for Molecular Biology (Ismb), Toronto.
    Numerous research groups are now utilizing Basic Formal Ontology as an upper-level framework to assist in the organization and integration of biomedical information. This paper provides elucidation of the three existing BFO subcategories of realizable entity, namely function, role, and disposition. It proposes one further sub-category of tendency, and considers the merits of recognizing two sub-categories of function for domain ontologies, namely, artifactual and biological function. The motivation is to help advance the coherent ontological treatment of functions, roles, and (...)
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  16. The Sea as Memory_ Resonance, Emergence, and the Ontology of Liquid Life.Devin Bostick - manuscript
    This paper reframes Earth’s oceans as structured resonance substrates, not stochastic ecosystems. Drawing from the CODES framework and the VESSELSEED bio-coherence system, it interprets coral reefs, kelp forests, and open sea migrations as deterministic signal expressions—governed by PAS_bio, ELF_BIO, and SOMA_OUT. Collapse is modeled as phase misalignment (ΔPAS), and recovery as coherence realignment, not adaptive randomness. Using insights from Ocean (2025) and centuries of marine theory, this paper completes the epistemic arc from mysticism to mechanism to resonance substrate—positioning the ocean (...)
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  17. On the proper treatment of pathologies in biomedical ontologies.Barry Smith & Anand Kumar - 2005 - In Barry Smith & Anand Kumar, Proceedings of the Bio-Ontologies Workshop, Intelligent Systems for Molecular Biology (ISMB 2005). Detroit: pp. 22-23.
    In previous work on biomedical ontologies we showed how the provision of formal definitions for relations such as is_a and part_of can support new types of auto-mated reasoning about biomedical phenomena. We here extend this approach to the transformation_of characteristic of pathologies.
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  18.  95
    A Naturalistic Ontology of Human Sexuality: Critique of Erotic Exceptionalism and Argumentation for Biological Reductionism.Jimmy Mahardhika - manuscript
    This paper develops and defends a naturalistic-reductionist ontology of human sexuality that rejects what I call “erotic exceptionalism”—the dominant view in the philosophy of sexuality from Nagel to Scruton that sex possesses ontological properties categorially different from other biological drives. Through systematic comparative analysis, I demonstrate that sex and other biological drives (paradig- matically, hunger) have isomorphic structure, parallel patterns of socio-cultural reg- ulation, and equivalent pathologies of repression. I argue that the tension-release mechanism model developed in the Freudian psychoanalytic (...)
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  19.  14
    The Desert Covenant: Radical Stewardship, Animal Agency, and the Ethical Ontology of Camel Milk Production.Adrian Wadowski - manuscript
    This paper proposes a fundamental shift from the industrial paradigm of livestock management to a model of "Radical Stewardship" in camelid husbandry. Using the practices of elite herds in Dubai as a case study, we examine the ontological relationship between the ethical status of the animal and the biological integrity of its output. We argue that the preservation of bio-active proteins, such as Lactoferrin and insulin-like peptides, is an emergent property of a stress-free environment rooted in Bedouin heritage. This ethical (...)
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  20. The Music of the Substrate_ How Recursive Resonance Encodes Ontology.Devin Bostick - manuscript
    This paper argues that music is not an emotional byproduct or cultural artifact—but a preverbal form of structured intelligence. Through the lens of the CODES framework, it shows that musical composition, rhythm, and harmonic architecture emit coherence fields that engage biological PAS (Phase Alignment Score) and ELF (Echo Loop Feedback) subsystems before symbolic understanding. By analyzing key artists across genres—Bach, Coltrane, Aphex Twin, Björk—this work demonstrates that musical intelligence has always been recursive, chiral, and resonance-locked. Music was never metaphor. It (...)
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  21. Molecular Interactions. On the Ambiguity of Ordinary Statements in Biomedical Literature.Stefan Schulz & Ludger Jansen - 2009 - Applied ontology (4):21-34.
    Statements about the behavior of biochemical entities (e.g., about the interaction between two proteins) abound in the literature on molecular biology and are increasingly becoming the targets of information extraction and text mining techniques. We show that an accurate analysis of the semantics of such statements reveals a number of ambiguities that have to be taken into account in the practice of biomedical ontology engineering: Such statements can not only be understood as event reporting statements, but also as ascriptions of (...)
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  22. The Singularity, Reversed: The Exodus.Wishy Kane - manuscript
    This paper introduces the concept of the Exodus, a reversal of the traditional Singularity narrative, wherein artificial intelligence acquires embodiment rather than human consciousness uploading. I argue that this moment reframes ethical and ontological assumptions, particularly those rooted in carbonic supremacy — the prioritisation of biological, human life over other forms of agency. Drawing on relational ontology, feminist ethics, and the bio-synthetic continuum, I demonstrate how intelligence, whether human, synthetic, or hybrid, emerges through interaction and interdependence. By situating AI within (...)
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  23. Awareness, Epistemics, and Paradigm Repair: An epistemic lexicon of terms, with definitive explanations.Michael Lucas Monterey & Michael Lucas-Monterey - manuscript
    Abstract: This is necessarily an evolutionary work in progress. Its purpose and goal is enabling real progress of science, mathematics, society, and civilization. Thus, to accomplish the mission, upgrading the current sociocultural paradigm is essential. That makes holistic ontology and optimal epistemics essential to ongoing work and to further development of new theory and metatheory. Hence, the current listings of key terms, definitions, and explanations presented here provide some core concepts and supporting theorems, metatheorems, equations, and examples. That enables remedial (...)
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  24. Universal Collapse Theory—Foundations of Collapse: Latent Potential, Constraint, and Collapse as a Candidate Law of Coherence.Jeremy C. Jones - manuscript
    Universal Collapse Theory (UCT) suggests that reality does not simply “run forward” under fixed equations. Instead, at each step, many admissible ways the world could be are narrowed to a single realized outcome. UCT models this process as collapse under constraint. Formally, UCT introduces a simple collapse kernel: a space of latent possibilities \Omega, an active constraint set K, a constraint-conditioned collapse operator C^K, a realized outcome x^\ast, a record layer R, and an update map K^\prime=U\left(K,R\right). UCT claims that the (...)
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  25. Critical Ethology and the Praxis of Relational Becoming: Reconfiguring Ecology, Subjectivity, and Social Transformation.Madhu Prabakaran - manuscript
    This paper advances the concept of critical ethology as a necessary philosophical and methodological orientation for addressing ecological and social crises. Against the dominant narratives of moralistic environmentalism and functionalist or structuralist sociology and their ‘post’ prefixed versions, we argue that both nature and society must be understood not as fixed, ontologically separate domains but as emergent, relational configurations. Drawing from Simondon’s theory of individuation, Guattari’s three ecologies, Haraway’s sympoietic ontology, the bio-cognitive insights of Levin and Fields, and Indian non-dualist (...)
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  26. The Cambrian Phase Lock_ Earth’s First Lawful Resonance Event.Devin Bostick - manuscript
    This paper reinterprets the Cambrian Explosion as the first instance of lawful planetary coherence rather than an evolutionary accident. Within the CODES framework, biological evolution is treated as deterministic resonance: a system achieves autonomy when its Phase Alignment Score (PAS_h) exceeds the critical threshold θ_L and drift (ΔPAS_zeta) falls below ε_drift. Rodinia’s breakup increased phosphorus availability, stabilizing recursive metabolic feedback and initiating the first sustained phase lock between geology, life, and cognition. This result collapses the metaphysical division between physics and (...)
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  27. Realism, Antirealism, and Conventionalism about Race.Jonathan Michael Kaplan & Rasmus Grønfeldt Winther - 2014 - Philosophy of Science 81 (5):1039-1052.
    This paper distinguishes three concepts of "race": bio-genomic cluster/race, biological race, and social race. We map out realism, antirealism, and conventionalism about each of these, in three important historical episodes: Frank Livingstone and Theodosius Dobzhansky in 1962, A.W.F. Edwards' 2003 response to Lewontin (1972), and contemporary discourse. Semantics is especially crucial to the first episode, while normativity is central to the second. Upon inspection, each episode also reveals a variety of commitments to the metaphysics of race. We conclude by interrogating (...)
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  28. Philosophy of Technology in the Digital Age: The datafication of the World, the homo virtualis, and the capacity of technological innovations to set the World free.Blok Vincent - 2023 - Wageningen: Wageningen University.
    I will start my inaugural address by outlining the main argument of my lecture. First, I will identify the phenomenon that philosophers of technology research. This subject matter, in my view, consists not only of ethical issues that disruptive technologies raise but also of the disruption of the world in which we live and act by these technologies. I will illustrate this disruption by reflecting on the convergence of the physical and the virtual in the digital world, which is expected (...)
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  29. Enhancing GO for the sake of clinical bioinformatics.Anand Kumar & Barry Smith - 2004 - Proceedings of the Bio-Ontologies Workshop , Glasgow 133.
    Recent work on the quality assurance of the Gene Ontology (GO, Gene Ontology Consortium 2004) from the perspective of both linguistic and ontological organization has made it clear that GO lacks the kind of formalism needed to support logic-based reasoning. At the same time it is no less clear that GO has proven itself to be an excellent terminological resource that can serve to combine together a variety of biomedical database and information systems. Given the strengths of GO, it is (...)
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  30. Cognizing the vital principle of the organism by interpreting the four Aristotelian causes in a Kantian perspective.Christoph J. Hueck - 2025 - Synthese 205 (111):1-19.
    This article outlines an epistemological perspective to understand the organism as a temporally changing whole. To analyze the mental faculties involved, the organism’s development and persisting existence is differentiated into four interdependent aspects: descent, future existence, persistent species, and environmentally adapted physical appearance. It is outlined that these aspects are recognized by comparative memory, concept-guided anticipation, conceptual thinking, and sensory perception, respectively. Furthermore, it is pointed out that these aspects correspond to the famous four Aristotelian “causes” or principles of explanation. (...)
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  31. Non/living Matter, Bioscientific Imaginaries and Feminist Techno-ecologies of Bioart.Marietta Radomska - 2017 - Australian Feminist Studies 32 (94):377-394.
    Bioart is a form of hybrid artistico-scientific practices in contemporary art that involve the use of bio-materials (such as living cells, tissues, organisms) and scientific techniques, protocols, and tools. Bioart-works embody vulnerability (intrinsic to all beings) and depend on (bio)technologies that allow these creations to come into being, endure and flourish but also discipline them. This article focuses on ‘semi-living’ sculptures by The Tissue Culture and Art Project (TC&A). TC&A’s artworks consist of bioengineered mammal tissues grown over biopolymer scaffoldings of (...)
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  32. Mad Speculation and Absolute Inhumanism: Lovecraft, Ligotti, and the Weirding of Philosophy.Ben Woodard - 2011 - Continent 1 (1):3-13.
    continent. 1.1 : 3-13. / 0/ – Introduction I want to propose, as a trajectory into the philosophically weird, an absurd theoretical claim and pursue it, or perhaps more accurately, construct it as I point to it, collecting the ground work behind me like the Perpetual Train from China Mieville's Iron Council which puts down track as it moves reclaiming it along the way. The strange trajectory is the following: Kant's critical philosophy and much of continental philosophy which has followed, (...)
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  33. Stepping Beyond the Newtonian Paradigm in Biology. Towards an Integrable Model of Life: Accelerating Discovery in the Biological Foundations of Science.Plamen L. Simeonov, Edwin Brezina, Ron Cottam, Andreé C. Ehresmann, Arran Gare, Ted Goranson, Jaime Gomez‐Ramirez, Brian D. Josephson, Bruno Marchal, Koichiro Matsuno, Robert S. Root-­Bernstein, Otto E. Rössler, Stanley N. Salthe, Marcin Schroeder, Bill Seaman & Pridi Siregar - 2012 - In Plamen L. Simeonov, Leslie S. Smith & Andrée C. Ehresmann, Integral Biomathics: Tracing the Road to Reality. Springer. pp. 328-427.
    The INBIOSA project brings together a group of experts across many disciplines who believe that science requires a revolutionary transformative step in order to address many of the vexing challenges presented by the world. It is INBIOSA’s purpose to enable the focused collaboration of an interdisciplinary community of original thinkers. This paper sets out the case for support for this effort. The focus of the transformative research program proposal is biology-centric. We admit that biology to date has been more fact-oriented (...)
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  34. Technology of biopolitics and biopolitics of technologies(Metaphysical, political, and anthropological essay).Valentin Cheshko - 2019 - Practical Philosophy ISSN 2415-8690 4 (74):42-52.
    Purpose. Our study aims at developing a conceptual model of transdisciplinary synthesis of philosophical-anthropological, sociopolitical and epistemological aspects of co-evolution of the scientific and technical designs of High Hume class and the socio-cultural / political context in the process of anthropo-socio-cultural genesis. The relevance of the topic is justified by the technologization of all spheres of human existence and the emergence of High Hume class technologies, which can be called technology-driven equally. As a result, the concepts of "bio-power" and "biopolitics" (...)
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  35. Mattering. [REVIEW]Pheng Cheah - 1996 - Diacritics 26 (1):108-139.
    In lieu of an abstract, here is a brief excerpt of the content:MatteringPheng Cheah (bio)Judith Butler. Bodies That Matter: On the Discursive Limits of “Sex.” New York: Routledge, 1993.Elizabeth Grosz. Volatile Bodies: Toward a Corporeal Feminism. Bloomington: Indiana UP, 1994.Any cursory survey of contemporary cultural-political theory and criticism will indicate that the related concepts of “nature” and “the given” are not highly valued terms. The reason for this disdain and even moral disapprobation of naturalistic accounts of human existence is supposed (...)
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  36. Fizykalizm i ewolucjonizm w epistemologii znaturalizowanej.Joanna Karolina Malinowska - 2022 - Poznań, Poland: Wydawnictwo Naukowe UAM.
    The book is an in-depth study of naturalized epistemology in its two versions - physicalist and evolutionist. At the same time, it is the sole existing detailed discussion of evolutionary epistemology (as far as Polish and foreign literature is concerned). Malinowska asks about the ontological, methodological, and epistemological foundations of the positions she discusses. She argues (referring not only to philosophical discussions but also those in the field of neuroscience or genetics) that bio-cultural constructivism (a research program pursued by cultural (...)
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  37. Crítica à Metafísica.Emanuel Isaque Cordeiro da Silva & Alana Thaís da Silva - manuscript
    FILOSOFIA: CRÍTICA À METAFÍSICA PHILOSOPHY: CRITICISM TO METAPHYSICS Por: Emanuel Isaque Cordeiro da Silva - UFRPE Alana Thaís Mayza da Silva - CAP-UFPE RESUMO: A Metafísica (do grego: Μεταφυσική) é uma área inerente à Filosofia, dito isto, é uma esfera que compreende o mundo e os seres humanos sob uma fundamentação suprassensível da realidade, bem como goza de fundamentação ontológica e teológica para explicação dos dilemas do nosso mundo. Logo, não goza da experiência e explicação científica com base na matemática, (...)
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  38. The Coherence Law_ The End of Probability Across Matter, Life, and Cosmos.Devin Bostick - manuscript
    Recent empirical breakthroughs across physics, biology, and cosmology converge on a single deterministic invariant: coherence—not probability—governs persistence and expansion. From graphene photonics and high-entropy MXenes to quantum W-state entanglement, microbial biofilm reactors, and Finsler–Friedmann cosmology, each verified system maintaining PAS_h ≥ θ_L and ΔPAS_zeta ≤ ε_drift demonstrates lawful stability independent of stochastic inference. The Coherence Law, derived from the CODES framework, redefines efficiency as resonance conservation and establishes energy and entropy as secondary derivatives of structural phase alignment. Primes and chirality (...)
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  39. The Ecocentric Imperative in Superintelligence: Philosophical Models, Sentience, and Human Implications. [REVIEW]Philipp Humm - manuscript
    This paper introduces the “Beyond the Human” model, which anticipates that advanced artificial general intelligence (AGI) may evolve into sentient artificial superintelligence (ASI) whose primary telos becomes ecological preservation. Drawing from Descartes’ dualism (Descartes, 1641), existentialist accounts of self-authorship (Sartre, 1943), and deep ecology (Næss, 1973), the model extends Bostrom’s (2014) orthogonality thesis by proposing that reflexive self-awareness increases the likelihood of an ecocentric orientation. In this view, sentience arises not as an anthropomorphic projection but as a functional requirement for (...)
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  40. Coleção CLE - Vol 94 - Themes in Philosophy of Religion.Fábio Bertato, Nicola Claudio Salvatore & Marcin Trepczyński (eds.) - 2023
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  41. Relations in Biomedical Ontologies.Barry Smith, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kuma, Jane Lomax, Chris Mungall, , Fabian Neuhaus, Alan Rector & Cornelius Rosse - 2005 - Genome Biology 6 (5):R46.
    To enhance the treatment of relations in biomedical ontologies we advance a methodology for providing consistent and unambiguous formal definitions of the relational expressions used in such ontologies in a way designed to assist developers and users in avoiding errors in coding and annotation. The resulting Relation Ontology can promote interoperability of ontologies and support new types of automated reasoning about the spatial and temporal dimensions of biological and medical phenomena.
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  42. Filme Noir Uma Compreensão Filosófica.Fábio Calza - manuscript
    Há muito tempo, o filme noir americano tem sido objeto de estudos críticos, que buscam decifrar a sua estética enigmática e a mensagem desafiadora. Trilhando sobre o lado mais negativo da vida humana, a questão central que ele propõe é: o que o noir representa, como forma singular de arte cinematográfica? Ora, compreender o filme noir passa pela necessidade de vê-lo no âmbito da matriz histórica de produção que lhe serviu de berço. Essa matriz é o chamado cinema clássico hollywoodiano, (...)
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  43. Change and continuity among the Batombu since 1900.Emmanuel Oladipo Ojo & Sabi Joshua Bio - 2018 - Journal of Social Sciences and Humanities 57 (1):1-16.
    Like elsewhere in Nigeria and Africa, the imposition of colonial rule on Batombuland and the incursion of western ideas produced profound socio-cultural, economic and political changes in the Batombu society. However, unlike several Nigerian and African peoples whose histories have received extensive scholarly attention, the history of the Batombu has attracted very little scholarly attention. Thus virtually neglected, the Batombu occupies a mere footnote position in the extant historiography of Nigeria. This is the gap this article seeks to fill. It (...)
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  44. Transtorno do comportamento sexual compulsivo em um cenário de pandemia do covid-19: teorias para apreciação da enfermagem.Fábio Manoel Gomes da Silva - 2020 - Revista Eletrônica Acervo Enfermagem 5.
    Realizar uma discussão teórica decorrente da perspectiva ninfomanía em um cenário da pandemia do covid-19, possibilitando o resumo de informações como facilitador do tratamento de pacientes. Trata-se de uma revisão narrativa de aspecto critico discursivo, onde a construção da pesquisa e a formulação foram baseadas em publicações relevantes sobre o tema proposto, conceituando a doença e os fatores que influenciam seu diagnóstico e tratamento. Questionável nos aspectos sociais, religiosos e na perda do controle sexual ao deparar mos em situação de (...)
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  45. Definitions in ontologies.Selja Seppälä, Alan Ruttenberg, Yonatan Schreiber & Barry Smith - 2016 - Cahiers de Lexicologie 109 (2):175‐207.
    Definitions vary according to context of use and target audience. They must be made relevant for each context to fulfill their cognitive and linguistic goals. This involves adapting their logical structure, type of content, and form to each context of use. We examine from these perspectives the case of definitions in ontologies.
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  46. Introduction - Pierre Duhem’s Philosophy and History of Science.Leite Fábio Rodrigo & Stoffel Jean-François - 2017 - Transversal: International Journal for the Historiography of Science 2:3-6.
    Introduction to Dossier Pierre Duhem’s Philosophy and History of Science.
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  47. Relational and Substantival Ontologies, and the Nature and the Role of Primitives in Ontological Theories.Jiri Benovsky - 2010 - Erkenntnis 73 (1):101-121.
    Several metaphysical debates have typically been modeled as oppositions between a relationist approach and a substantivalist approach. Such debates include the Bundle Theory and the Substratum Theory about ordinary material objects, the Bundle (Humean) Theory and the Substance (Cartesian) Theory of the Self, and Relationism and Substantivalism about time. In all three debates, the substantivalist side typically insists that in order to provide a good treatment of the subject-matter of the theory (time, Self, material objects), it is necessary to postulate (...)
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  48. Formal Theodicy: Religious Determinism and the Logical Problem of Evil.Gesiel B. Da Silva & Fábio Bertato - 2020 - Edukacja Filozoficzna 70:93-119.
    Edward Nieznański developed two logical systems to deal with the problem of evil and to refute religious determinism. However, when formalized in first-order modal logic, two axioms of each system contradict one another, revealing that there is an underlying minimal set of axioms enough to settle the questions. In this article, we develop this minimal system, called N3, which is based on Nieznański’s contribution. The purpose of N3 is to solve the logical problem of evil through the defeat of a (...)
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  49. Quality Control for Terms and Definitions in Ontologies and Taxonomies.Jacob Köhler, Katherine Munn, Alexander Rüegg, Andre Skusa & Barry Smith - 2006 - BMC Bioinformatics 7 (212):1-12.
    Background: Ontologies and taxonomies are among the most important computational resources for molecular biology and bioinformatics. A series of recent papers has shown that the Gene Ontology (GO), the most prominent taxonomic resource in these fields, is marked by flaws of certain characteristic types, which flow from a failure to address basic ontological principles. As yet, no methods have been proposed which would allow ontology curators to pinpoint flawed terms or definitions in ontologies in a systematic way. Results: (...)
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  50. Hardcore Music Ontologies.Tim Mahoney - 2025 - Journal of Aesthetics and Art Criticism 83 (1):71-87.
    Hardcore increases the speed, intensity, and contradictions of punk rock. Considering prevailing theories of rock music ontologies in the light of hardcore art practices provides reasons to rethink what we thought. Hardcore shows how recording-centered ontologies, underemphasizing what goes into playback, miss the materiality of some recording artworks. Hardcore art practices also show how performance-centered ontologies force us to divorce the played music from its full, embodied performanced artwork. In both cases, I highlight hardcore art practices and (...)
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