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Showing 4 open source projects for "particle"

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1

ProtPOS

Prediction of PROTtein Preferred Orientation on a Surface

ProtPOS is a self-contained, lightweight, and easy-to-use software package for predicting the preferred orientation of protein on a given surface upon initial adsorption. It searches quickly for the low energy protein poses in all translational and rotational degrees of freedom of the protein with respect to the surface using particle swarm optimization. Each successful run returns the lowest energy orientation of the protein on the surface in PDB format, which is readily used for MD simulations. ProtPOS is implemented in Python, making use of the PyMOL library for generating protein conformations and calling GROMACS externally to calculate protein-surface interaction energies. ...

Downloads: 6 This Week

Last Update: 2018-07-29
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2

AU FLUKA Tools

Provides auxiliary tools for the Monte Carlo particle transport code FLUKA (www.fluka.org).

Downloads: 0 This Week

Last Update: 2016-02-16
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3

S2E

This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.

Downloads: 1 This Week

Last Update: 2014-04-24
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4

SPHear

SPHear is a coupled smoothed particle hydrodynamics (SPH), finite element (FE) fluid-solid interaction analysis code for dynamic problems.

Downloads: 0 This Week

Last Update: 2013-03-21
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