TomoJ Activity
ImageJ plugin to perform Electron Tomography
Brought to you by:
cmessaoudi,
jesuscuenca
Activity for TomoJ
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TomoJ released /fiducial tracking/TomoJ_Features-2.8.3-jar-with-dependencies.jar
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Messaoudi committed [49eb75]
update
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update
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update
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added macro recorder compatibility
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update
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macro recorder compatibility, code and display beautifying
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update call to getTransform. the numbering of points are now corresponding to landmark number
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added fiducial detection and matching using clusters
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update call to getTransform
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added posisbility of fiducials chains with DoG and cluster matching
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detection of seeds using DoG
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updated call to getTransform
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update
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update version
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added check of landmark chains after removal of bad chains to be sure that computation will be possible. Stop computation if not.
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improvements
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update
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set long object compensation to false by default (solve a bug with command line)
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update
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improvements
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code simplifying
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adapted to the new parameters for DoG and cluster matching
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now works with DoG for detection and clusters for matching
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code beautifying
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added verbosity
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compatibility with macro recording
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put back correction of height + warning message if landmarks chains not correct before the computation
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added centering of rjs
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added method for parameters of assigning regular tilt angles
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added method to get transform with information of tiltseries
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makes TomoJ compliant with macro in ImageJ
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new version 2.8.2
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module inpainting removed
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removal of inpainting module
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ouput improvement
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corrected a bug with fista activated by default
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corrected bug
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corrected bug when not compatible gpu is present on computer. It was always compiling or all devices even if deactivated from use. Now it performs compilation of OpenCL code only on devices selected for computation
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changed default selection of scaling (it was deselected but functionality was by default activated in rest of code). Behavior was uniformed.
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changed version in about window to 2.8.2
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corrected a bug in projection preventing reconstruction of smaller volumes than tiltseries.
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readme
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correct bug number of images
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improved output
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improved output
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corrected bug with ask4angles when angles are null
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corrected bug of volume put at 0 after first iteration
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GPL v3 license
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removed testCase
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changed default reconstruction type to OSSART
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improved output
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removed testCase
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corrected bug of endian in reading tilt angles from MRC files
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updated web site adress
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EFTEM module location updated
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moved EFTEM module location
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removed problematic toFront of the preview window
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update display
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improved display
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corrected link to plugins call when exporting aligned image in MRC or Spider
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changed default values
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added BgART to possibilities
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corrected bug of display preview that did not reappear after it was closed
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added BgART Application
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added a new method to get only parameters of reconstruction
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corrected version
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added BgART
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change of version
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improved output for user
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set recParam as a class object instead of local
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allow update change for regularization
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added application for bayesian reconstruction
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added EFTEM_TomoJ module
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added bayesian reconstruction access
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update version
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now xcorr save automatically in final transform and load final transform is proposed in the help
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update
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added possibility of testing GPU install
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added options for reconstruction
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geteuler corrected handedness to get same as with Affine2D (older version)
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added function for dual-axis tomography
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changed possible increments for rotation
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