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It should imo be the genes that were eligable to yield a "significant" result in your analysis. So, if you test set is derived from differe…
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> How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()?
Exactly the same. Both soft…
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anni
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Ok, thanks!
I have just a couple more questions:
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Thanks for sharing your workflow and benchmarking approach - very informative!
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These provide updated manifests and annotations aligned with the latest genome build (hg38) and probe content for the EPIC V2 array.
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