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Conference Community Galaxy GBCC2025 Bioconductor

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DESeq2 Galaxy pca

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DESeq2 RNASeq Galaxy

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ballgown StringTie galaxy rnaseq

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rnaseq galaxy deseq2

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DESeq2 Galaxy

updated 9.4 years ago by Michael Love 43k • written 9.4 years ago by Marcelo Pereira ▴ 70

9 results • Page 1 of 1

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Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments by James W. MacDonald 68k

By looking at the code, after searching for `makeChipPackage` at https://code.bioconductor.org, under Code search. That will bring up [this…

Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments by Jaqueline • 0

Thank you so much for the help!! That solved it alright :DDDDD How did you figure it was the names? I ask because it was a rather simple s…

Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments by James W. MacDonald 68k

Try changing the column names for your probeFrame to 'probes' and 'genes'.

Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments by Jaqueline • 0

Thanks for the reply (: Here is the result (I removed my email, and the probeFrame I created is under a different name "mapping_df", but t…

Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments by James W. MacDonald 68k

Will you run again, and this time right after the error, run `traceback()` and post the results here.

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Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments

Answer: Limma : paired samples leading to unexpected estimates

Answer: Differential expression on the transcript-level

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