Bioconductor Mouse

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annotation SingleR mouse SingleCellData scRNAseq

7 months ago Muhammad • 0

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915

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TFutils mouse gene convert

4.3 years ago nicocillari • 0

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2.1k

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RNAseq Affymetrix Mouse

updated 4.9 years ago by Guido Hooiveld ★ 4.1k • written 4.9 years ago by olrema • 0

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AnnotationHub Ensembl Mouse AnnotationHub Ensembl

5.8 years ago dmgatti ▴ 10

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deseq2 mouse rnaseq

7.8 years ago Emilie • 0

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2.3k

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Annotation mouse UNIPROT

updated 8.0 years ago by Mike Smith ★ 6.6k • written 8.0 years ago by julie.chevalier • 0

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human mouse ensembl annotationdbi homologue

8.3 years ago • updated 8.2 years ago Keith Hughitt ▴ 180

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bead chip Annotation Mouse Lumi probeID2nuID

updated 9.1 years ago by Andy Lynch ▴ 120 • written 9.1 years ago by smt8n • 0

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biomart ensembl release82 variation mouse News

10.0 years ago Thomas Maurel ▴ 800

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3.3k

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human mouse GRCh38 biomart Ensembl News

updated 10.2 years ago by Sonali Arora ▴ 390 • written 10.2 years ago by Thomas Maurel ▴ 800

10 results • Page 1 of 1

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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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