BiobaseNewick
Newick file format parser.
https://github.com/choener/BiobaseNewick
| LTS Haskell 24.51: | 0.0.0.2@rev:1 |
| Stackage Nightly 2026-07-22: | 0.0.0.2@rev:1 |
| Latest on Hackage: | 0.0.0.2@rev:1 |
BiobaseNewick-0.0.0.2@sha256:b024b37bdc07873831f32a14eea3622f9391dd12a6f956efa0361ab3b82fb960,3456Module documentation for 0.0.0.2
BiobaseNewick
This is a simple parser for Newick trees. The parser returns a rose tree. Each node is labelled with the node name (or an empty string for anonymous nodes) and a distance (0 if not given).
Newick trees can be ex- and imported into the Newick tree format. We also have serialization to the usual serializers.
This package was written mostly to complement a course a Univ. Leipzig. There is a more comprehensive package written by R. Newton http://hackage.haskell.org/package/phybin which you might want instead.
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
[email protected]
http://www.bioinf.uni-leipzig.de/~choener/