[](https://zenodo.org/badge/latestdoi/71802271) <img src="vignettes/hexELMER.png" width="200"> ### An R/Bioconductor Tool Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Methylomes #### Citing ELMER Tiago C Silva, Simon G Coetzee, Nicole Gull, Lijing Yao, Dennis J Hazelett, Houtan Noushmehr, De-Chen Lin, Benjamin P Berman; ELMER v.2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles, Bioinformatics, , bty902, https://doi.org/10.1093/bioinformatics/bty902 #### Main article https://doi.org/10.1093/bioinformatics/bty902 #### Installing and loading ELMER To obtain a copy of ELMER, you will need to install devtools and ELMER.data which contains essential data for running ELMER package ```r install.packages(devtools) library(devtools); devtools::install_github("tiagochst/ELMER.data"); devtools::install_github("tiagochst/ELMER"); ``` #### Documentation * [ELMER documentation](https://bioconductor.org/packages/devel/bioc/vignettes/ELMER/inst/doc/index.html) * [ELMER.data documentation](https://tiagochst.github.io/ELMER.data/index.nb.html) * [Paper supplemental files](https://tiagochst.github.io/ELMER_supplemental/)