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ORCIDBibTeX records: Melissa A. Basford
@article{DBLP:journals/npjdm/JeongRMKKHBMD25,
author = {Hayoung Jeong and
Ali R. Roghanizad and
Hiral Master and
Juseong Kim and
Aymone Kouame and
Paul A. Harris and
Melissa A. Basford and
Kayla Marginean and
Jessilyn Dunn},
title = {Data from the All of Us research program reinforces existence of activity
inequality},
journal = {npj Digit. Medicine},
volume = {8},
number = {1},
year = {2025},
url = {https://doi.org/10.1038/s41746-024-01358-4},
doi = {10.1038/S41746-024-01358-4},
timestamp = {Fri, 14 Feb 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/JeongRMKKHBMD25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/HumesSDLPJMMMAMAGGCCBML24,
author = {Izabelle P. Humes and
Cathy Shyr and
Moira Dillon and
Zhongjie Liu and
Jennifer Peterson and
Chris De St. Jeor and
Jacqueline Malkes and
Hiral Master and
Brandy Mapes and
Romuladus Azuine and
Nakia Mack and
Bassent Abdelbary and
Joyonna Gamble{-}George and
Emily Goldmann and
Stephanie Cook and
Fatemeh Choupani and
Rubin Baskir and
Sydney J. McMaster and
Chris Lunt and
Karriem Watson and
Minnkyong Lee and
Sophie Schwartz and
Ruchi Munshi and
David Glazer and
Eric Banks and
Anthony Philippakis and
Melissa A. Basford and
Dan M. Roden and
Paul A. Harris},
title = {Empowering the biomedical research community: Innovative {SAS} deployment
on the \emph{All of Us} Researcher Workbench},
journal = {J. Am. Medical Informatics Assoc.},
volume = {31},
number = {12},
pages = {2994--3000},
year = {2024},
url = {https://doi.org/10.1093/jamia/ocae216},
doi = {10.1093/JAMIA/OCAE216},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/HumesSDLPJMMMAMAGGCCBML24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MapesPWBCHD24,
author = {Brandy Mapes and
Rachele S. Peterson and
Karriem Watson and
Melissa A. Basford and
Elizabeth Cohn and
Paul A. Harris and
Joshua C. Denny},
title = {Informatics innovation to provide return of value to participant communities
in the \emph{All of Us} Research Program},
journal = {J. Am. Medical Informatics Assoc.},
volume = {31},
number = {12},
pages = {3042--3046},
year = {2024},
url = {https://doi.org/10.1093/jamia/ocae264},
doi = {10.1093/JAMIA/OCAE264},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/MapesPWBCHD24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/XiaBCCHKLNVWM23,
author = {Weiyi Xia and
Melissa A. Basford and
Robert J. Carroll and
Ellen Wright Clayton and
Paul A. Harris and
Murat Kantarcioglu and
Yongtai Liu and
Steve Nyemba and
Yevgeniy Vorobeychik and
Zhiyu Wan and
Bradley A. Malin},
title = {Managing re-identification risks while providing access to the \emph{All
of Us} research program},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {5},
pages = {907--914},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad021},
doi = {10.1093/JAMIA/OCAD021},
timestamp = {Thu, 01 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/XiaBCCHKLNVWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PfaffGCGMWKWHBLCMH23,
author = {Emily R. Pfaff and
Andrew T. Girvin and
Miles Crosskey and
Srushti Gangireddy and
Hiral Master and
Wei{-}Qi Wei and
Vern Eric Kerchberger and
Mark G. Weiner and
Paul A. Harris and
Melissa A. Basford and
Christopher Lunt and
Christopher G. Chute and
Richard A. Moffitt and
Melissa A. Haendel},
title = {De-black-boxing health {AI:} demonstrating reproducible machine learning
computable phenotypes using the {N3C-RECOVER} Long {COVID} model in
the \emph{All of Us} data repository},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {7},
pages = {1305--1312},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad077},
doi = {10.1093/JAMIA/OCAD077},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/PfaffGCGMWKWHBLCMH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/KanakarajRBBJLX22,
author = {Praitayini Kanakaraj and
Karthik Ramadass and
Shunxing Bao and
Melissa A. Basford and
Laura M. Jones and
Ho Hin Lee and
Kaiwen Xu and
Kurt G. Schilling and
John Jeffrey Carr and
James G. Terry and
Yuankai Huo and
Kim L. Sandler and
Allen T. Netwon and
Bennett A. Landman},
title = {Workflow Integration of Research {AI} Tools into a Hospital Radiology
Rapid Prototyping Environment},
journal = {J. Digit. Imaging},
volume = {35},
number = {4},
pages = {1023--1033},
year = {2022},
url = {https://doi.org/10.1007/s10278-022-00601-2},
doi = {10.1007/S10278-022-00601-2},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jdi/KanakarajRBBJLX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/RamirezSSHQRLMB22,
author = {Andrea H. Ramirez and
Lina M. Sulieman and
David J. Schlueter and
Alese E. Halvorson and
Jun Qian and
Francis Ratsimbazafy and
Roxana Loperena{-}Cortes and
Kelsey R. Mayo and
Melissa A. Basford and
Nicole Deflaux and
Karthik Muthuraman and
Karthik Natarajan and
Abel N. Kho and
Hua Xu and
Consuelo H. Wilkins and
Hoda Anton{-}Culver and
Eric Boerwinkle and
Mine Cicek and
Cheryl R. Clark and
Elizabeth Cohn and
Lucila Ohno{-}Machado and
Sheri D. Schully and
Brian K. Ahmedani and
Maria Argos and
Robert M. Cronin and
Christopher J. O'Donnell and
Mona Fouad and
David B. Goldstein and
Philip Greenland and
Scott J. Hebbring and
Elizabeth W. Karlson and
Parinda Khatri and
Bruce Korf and
Jordan W. Smoller and
Stephen Sodeke and
John Wilbanks and
Justin Hentges and
Stephen Mockrin and
Christopher Lunt and
Stephanie A. Devaney and
Kelly Gebo and
Joshua C. Denny and
Robert J. Carroll and
David Glazer and
Paul A. Harris and
George Hripcsak and
Anthony A. Philippakis and
Dan M. Roden},
title = {The \emph{All of Us} Research Program: Data quality, utility, and
diversity},
journal = {Patterns},
volume = {3},
number = {8},
pages = {100570},
year = {2022},
url = {https://doi.org/10.1016/j.patter.2022.100570},
doi = {10.1016/J.PATTER.2022.100570},
timestamp = {Sat, 06 Sep 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/RamirezSSHQRLMB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HumesLBMDSQWCGH20,
author = {Izabelle P. Humes and
Roxana Loperena{-}Cortes and
Melissa A. Basford and
Kelsey R. Mayo and
Joseph DiPaolo and
David J. Schlueter and
Jun Qian and
Wei{-}Qi Wei and
Robert J. Carroll and
David Glazer and
Paul A. Harris and
Anthony A. Philippakis and
Dan M. Roden and
Andrea H. Ramirez},
title = {The All of Us Research Program Researcher Workbench Phenotype Library:
Five Disease Implementations},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t005-1.4604904/t005-1.4604905/3416154-1.4605512/3417113-1.4605509},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/HumesLBMDSQWCGH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RamirezMCMBGHPR20,
author = {Andrea H. Ramirez and
Kelsey R. Mayo and
Robert J. Carroll and
Karthik Muthuraman and
Melissa A. Basford and
David Glazer and
Paul A. Harris and
Anthony A. Philippakis and
Dan M. Roden},
title = {The All of Us Research Program Researcher Workbench: Cloud based access
and analytics to advance precision medicine},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t006-1.4604857/t006-1.4604858/3415561-1.4604874/3416937-1.4604871},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RamirezMCMBGHPR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KirbySRBGPPTPCE16,
author = {Jacqueline Kirby and
Peter Speltz and
Luke V. Rasmussen and
Melissa A. Basford and
Omri Gottesman and
Peggy L. Peissig and
Jennifer A. Pacheco and
Gerard Tromp and
Jyotishman Pathak and
David S. Carrell and
Stephen B. Ellis and
Todd Lingren and
William K. Thompson and
Guergana Savova and
Jonathan L. Haines and
Dan M. Roden and
Paul A. Harris and
Joshua C. Denny},
title = {PheKB: a catalog and workflow for creating electronic phenotype algorithms
for transportability},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {6},
pages = {1046--1052},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocv202},
doi = {10.1093/JAMIA/OCV202},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KirbySRBGPPTPCE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RosenbloomHPBGDR14,
author = {S. Trent Rosenbloom and
Paul A. Harris and
Jill M. Pulley and
Melissa A. Basford and
Jason Grant and
Allison DuBuisson and
Russell L. Rothman},
title = {Brief communication: The Mid-South Clinical Data Research Network},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {4},
pages = {627--632},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2014-002745},
doi = {10.1136/AMIAJNL-2014-002745},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/RosenbloomHPBGDR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/DanciuCBWSOSKH14,
author = {Ioana Danciu and
James D. Cowan and
Melissa A. Basford and
Xiaoming Wang and
Alexander Saip and
Susan Osgood and
Jana Shirey{-}Rice and
Jacqueline Kirby and
Paul A. Harris},
title = {Secondary use of clinical data: The Vanderbilt approach},
journal = {J. Biomed. Informatics},
volume = {52},
pages = {28--35},
year = {2014},
url = {https://doi.org/10.1016/j.jbi.2014.02.003},
doi = {10.1016/J.JBI.2014.02.003},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/DanciuCBWSOSKH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/JeffBGRDKAMMAJGSDBPJCRHC14,
author = {Janina M. Jeff and
Kristin Brown{-}Gentry and
Robert J. Goodloe and
Marylyn D. Ritchie and
Joshua C. Denny and
Abel N. Kho and
Loren L. Armstrong and
Bob McClellan Jr. and
Ping Mayo and
Melissa Allen and
Hailing Jin and
Niloufar B. Gillani and
Nathalie Schnetz{-}Boutaud and
Holli H. Dilks and
Melissa A. Basford and
Jennifer A. Pacheco and
Gail P. Jarvik and
Rex L. Chisholm and
Dan M. Roden and
M. Geoffrey Hayes and
Dana C. Crawford},
editor = {Anna Isabel Esparcia{-}Alc{\'{a}}zar and
Antonio Miguel Mora},
title = {Replication of {SCN5A} Associations with Electrocardiographic Traits
in African Americans from Clinical and Epidemiologic Studies},
booktitle = {Applications of Evolutionary Computation - 17th European Conference,
EvoApplications 2014, Granada, Spain, April 23-25, 2014, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {8602},
pages = {939--951},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-45523-4\_76},
doi = {10.1007/978-3-662-45523-4\_76},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/evoW/JeffBGRDKAMMAJGSDBPJCRHC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PruittSKBHD12,
author = {Joshua Pruitt and
Peter Speltz and
Jacqueline Kirby and
Melissa A. Basford and
Jonathan L. Haines and
Joshua C. Denny},
title = {PheKB.org: An Online Collaboration Tool for Phenotype Algorithm Research},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-517-1.639645/a-518-1.639642},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/PruittSKBHD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PathakWKBLMC11,
author = {Jyotishman Pathak and
Janey Wang and
Sudha Kashyap and
Melissa A. Basford and
Rongling Li and
Daniel R. Masys and
Christopher G. Chute},
title = {Mapping clinical phenotype data elements to standardized metadata
repositories and controlled terminologies: the eMERGE Network experience},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {4},
pages = {376--386},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2010-000061},
doi = {10.1136/AMIAJNL-2010-000061},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PathakWKBLMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/XuJOBRJBPCWRMRCD11,
author = {Hua Xu and
Min Jiang and
Matthew Oetjens and
Erica A. Bowton and
Andrea H. Ramirez and
Janina M. Jeff and
Melissa A. Basford and
Jill M. Pulley and
James D. Cowan and
Xiaoming Wang and
Marylyn D. Ritchie and
Daniel R. Masys and
Dan M. Roden and
Dana C. Crawford and
Joshua C. Denny},
title = {Facilitating pharmacogenetic studies using electronic health records
and natural-language processing: a case study of warfarin},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {4},
pages = {387--391},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000208},
doi = {10.1136/AMIAJNL-2011-000208},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/XuJOBRJBPCWRMRCD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DennyRBPBBWMRC10,
author = {Joshua C. Denny and
Marylyn D. Ritchie and
Melissa A. Basford and
Jill M. Pulley and
Lisa Bastarache and
Kristin Brown{-}Gentry and
Deede Wang and
Daniel R. Masys and
Dan M. Roden and
Dana C. Crawford},
title = {PheWAS: demonstrating the feasibility of a phenome-wide scan to discover
gene-disease associations},
journal = {Bioinform.},
volume = {26},
number = {9},
pages = {1205--1210},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq126},
doi = {10.1093/BIOINFORMATICS/BTQ126},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DennyRBPBBWMRC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SchildcroutBPMRWCKCPKD10,
author = {Jonathan S. Schildcrout and
Melissa A. Basford and
Jill M. Pulley and
Daniel R. Masys and
Dan M. Roden and
Deede Wang and
Christopher G. Chute and
Iftikhar J. Kullo and
David Carrell and
Peggy L. Peissig and
Abel N. Kho and
Joshua C. Denny},
title = {An analytical approach to characterize morbidity profile dissimilarity
between distinct cohorts using electronic medical records},
journal = {J. Biomed. Informatics},
volume = {43},
number = {6},
pages = {914--923},
year = {2010},
url = {https://doi.org/10.1016/j.jbi.2010.07.011},
doi = {10.1016/J.JBI.2010.07.011},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/SchildcroutBPMRWCKCPKD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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