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José Francisco Aldana-Montes

José F. Aldana-Montes

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affiliation: University of Malaga, Ada Byron Research Center, Spain

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2020 – today

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2026
[j71]
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Adrián Segura-Ortiz, Antonio J. Nebro, José García-Nieto, José F. Aldana-Montes:
Multi-objective consensus optimization for gene regulatory networks inference: A preference-based approach. Comput. Biol. Chem. 121: 108827 (2026)
2025
[j70]
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Adrián Segura-Ortiz, Karen Giménez-Orenga, José García-Nieto, Elisa Oltra, José Francisco Aldana-Montes:
Multifaceted evolution focused on maximal exploitation of domain knowledge for the consensus inference of Gene Regulatory Networks. Comput. Biol. Medicine 196: 110632 (2025)
[j69]
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Hossein Nematzadeh, José García-Nieto, Sandro Hurtado, José Francisco Aldana-Montes, Ismael Navas-Delgado:
Model-agnostic local explanation: Multi-objective genetic algorithm explainer. Eng. Appl. Artif. Intell. 139: 109628 (2025)
[j68]
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Antonio M. Burgueño-Romero, Cristóbal Barba-González, José Francisco Aldana-Montes:
Big Data-driven MLOps workflow for annual high-resolution land cover classification models. Future Gener. Comput. Syst. 163: 107499 (2025)
[j67]
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Carlos Roberto Brys, Ismael Navas-Delgado, José F. Aldana-Montes, María del Mar Roldán-García:
LEGO: Linked electronic government ontology. J. Inf. Sci. 51(5): 1142-1163 (2025)
[j66]
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Antonio M. Burgueño-Romero, Antonio Benítez-Hidalgo, Cristóbal Barba-González, José Francisco Aldana-Montes:
Toward an Open Source MLOps Architecture. IEEE Softw. 42(1): 59-64 (2025)
[j65]
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José F. Aldana-Martín, Antonio Benítez-Hidalgo, José Francisco Aldana-Montes:
eidos: A modular approach to external function integration in LLMs. SoftwareX 31: 102290 (2025)
[i5]
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Cristóbal Barba-González, José Francisco Aldana-Montes, Ismael Navas-Delgado:
Semantic-Driven Workflow Automation for Large-Scale Data Analytics. ERCIM News 2025(140) (2025)
[i4]
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José García-Nieto, Virginia E. García-Millán, José Francisco Aldana-Montes:
Knowledge-driven Strategy for Scalable Land-cover Mapping Using Earth Observation Data. ERCIM News 2025(140) (2025)
2024
[j64]
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Antonio Picornell, Sandro Hurtado, María Luisa Antequera-Gómez, Cristóbal Barba-González, Rocío Ruiz-Mata, Enrique de Gálvez-Montañez, Marta Recio, María del Mar Trigo, José Francisco Aldana-Montes, Ismael Navas-Delgado:
A deep learning LSTM-based approach for forecasting annual pollen curves: Olea and Urticaceae pollen types as a case study. Comput. Biol. Medicine 168: 107706 (2024)
[j63]
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Adrián Segura-Ortiz, José García-Nieto, José Francisco Aldana-Montes, Ismael Navas-Delgado:
Multi-objective context-guided consensus of a massive array of techniques for the inference of Gene Regulatory Networks. Comput. Biol. Medicine 179: 108850 (2024)
[j62]
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Hossein Nematzadeh, José García-Nieto, José Francisco Aldana-Montes, Ismael Navas-Delgado:
Pattern recognition frequency-based feature selection with multi-objective discrete evolution strategy for high-dimensional medical datasets. Expert Syst. Appl. 249: 123521 (2024)
[j61]
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José F. Aldana-Martín, María del Mar Roldán-García, Antonio J. Nebro, José Francisco Aldana-Montes:
MOODY: An ontology-driven framework for standardizing multi-objective evolutionary algorithms. Inf. Sci. 661: 120184 (2024)
[j60]
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Hossein Nematzadeh, José García-Nieto, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Feature selection using a classification error impurity algorithm and an adaptive genetic algorithm improved with an external repository. Knowl. Based Syst. 301: 112345 (2024)
[c88]
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Adrián Segura-Ortiz, José García-Nieto, José Francisco Aldana-Montes:
Exploiting Medical-Expert Knowledge Via a Novel Memetic Algorithm for the Inference of Gene Regulatory Networks. ICCS (4) 2024: 3-17
2023
[j59]
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Antonio Benítez-Hidalgo, José Francisco Aldana-Montes, Ismael Navas-Delgado, María del Mar Roldán-García:
SALON ontology for the formal description of sequence alignments. BMC Bioinform. 24(1): 69 (2023)
[j58]
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Hossein Nematzadeh, José García-Nieto, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Ensemble-based genetic algorithm explainer with automized image segmentation: A case study on melanoma detection dataset. Comput. Biol. Medicine 155: 106613 (2023)
[j57]
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Adrián Segura-Ortiz, José García-Nieto, José Francisco Aldana-Montes, Ismael Navas-Delgado:
GENECI: A novel evolutionary machine learning consensus-based approach for the inference of gene regulatory networks. Comput. Biol. Medicine 155: 106653 (2023)
2022
[j56]
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Hossein Nematzadeh, José García-Nieto, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Automatic frequency-based feature selection using discrete weighted evolution strategy. Appl. Soft Comput. 130: 109699 (2022)
[j55]
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José F. Aldana-Martín, José García-Nieto, María del Mar Roldán-García, José Francisco Aldana-Montes:
Semantic modelling of Earth Observation remote sensing. Expert Syst. Appl. 187: 115838 (2022)
2021
[j54]
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Sandro Hurtado, José García-Nieto, Ismael Navas-Delgado, Antonio J. Nebro, José Francisco Aldana-Montes:
Reconstruction of gene regulatory networks with multi-objective particle swarm optimisers. Appl. Intell. 51(4): 1972-1991 (2021)
[j53]
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Sandro Hurtado, José García-Nieto, Ismael Navas-Delgado, José Francisco Aldana-Montes:
FIMED: Flexible management of biomedical data. Comput. Methods Programs Biomed. 212: 106496 (2021)
[j52]
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Cristóbal Barba-González, Antonio J. Nebro, José García-Nieto, María del Mar Roldán-García, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Injecting domain knowledge in multi-objective optimization problems: A semantic approach. Comput. Stand. Interfaces 78: 103546 (2021)
[j51]
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María del Mar Roldán-García, José García-Nieto, Alejandro Maté, Juan Trujillo, José Francisco Aldana-Montes:
Ontology-driven approach for KPI meta-modelling, selection and reasoning. Int. J. Inf. Manag. 58: 102018 (2021)
[j50]
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Antonio Benítez-Hidalgo, Cristóbal Barba-González, José García-Nieto, Pedro Gutiérrez-Moncayo, Manuel Paneque, Antonio J. Nebro, María del Mar Roldán-García, José Francisco Aldana-Montes, Ismael Navas-Delgado:
TITAN: A knowledge-based platform for Big Data workflow management. Knowl. Based Syst. 232: 107489 (2021)
2020
[j49]
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Antonio Benítez-Hidalgo, Antonio J. Nebro, José Francisco Aldana-Montes:
Sequoya: multiobjective multiple sequence alignment in Python. Bioinform. 36(12): 3892-3893 (2020)
[j48]
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Cristóbal Barba-González, Antonio J. Nebro, Antonio Benítez-Hidalgo, José García-Nieto, José Francisco Aldana-Montes:
On the design of a framework integrating an optimization engine with streaming technologies. Future Gener. Comput. Syst. 107: 538-550 (2020)
[j47]
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Cristóbal Barba-González, Antonio J. Nebro, José García-Nieto, José Francisco Aldana-Montes:
A multi-objective interactive dynamic particle swarm optimizer. Prog. Artif. Intell. 9(1): 55-65 (2020)
[j46]
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Esteban López-Camacho, María Jesús García-Godoy, José García-Nieto, Antonio J. Nebro, José Francisco Aldana-Montes:
Optimizing ligand conformations in flexible protein targets: a multi-objective strategy. Soft Comput. 24(14): 10705-10719 (2020)

2010 – 2019

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2019
[j45]
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María Jesús García-Godoy, Esteban López-Camacho, José García-Nieto, Javier Del Ser, Antonio J. Nebro, José Francisco Aldana-Montes:
Bio-inspired optimization for the molecular docking problem: State of the art, recent results and perspectives. Appl. Soft Comput. 79: 30-45 (2019)
[j44]
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Ismael Navas-Delgado, José García-Nieto, Esteban López-Camacho, Maciej Rybinski, Rocio Lavado-Valenzuela, Miguel Ángel Berciano Guerrero, José Francisco Aldana-Montes:
VIGLA-M: visual gene expression data analytics. BMC Bioinform. 20-S(4): 150:1-150:11 (2019)
[j43]
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José García-Nieto, Antonio J. Nebro, José Francisco Aldana-Montes:
Inference of gene regulatory networks with multi-objective cellular genetic algorithm. Comput. Biol. Chem. 80: 409-418 (2019)
[j42]
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Cristóbal Barba-González, José García-Nieto, María del Mar Roldán-García, Ismael Navas-Delgado, Antonio J. Nebro, José Francisco Aldana-Montes:
BIGOWL: Knowledge centered Big Data analytics. Expert Syst. Appl. 115: 543-556 (2019)
[j41]
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Liudmila Reyes-Alvarez, María del Mar Roldán-García, José Francisco Aldana-Montes:
Tool for materializing OWL ontologies in a column-oriented database. Softw. Pract. Exp. 49(1): 100-119 (2019)
[j40]
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José García-Nieto, Esteban López-Camacho, María Jesús García-Godoy, Antonio J. Nebro, José Francisco Aldana-Montes:
Multi-objective ligand-protein docking with particle swarm optimizers. Swarm Evol. Comput. 44: 439-452 (2019)
[i3]
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Carlos Roberto Brys, José Francisco Aldana-Montes, David Luis La Red Martínez:
Un Modelo Ontológico para el Gobierno Electrónico. CoRR abs/1907.02964 (2019)
2018
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Cristóbal Barba-González, José García-Nieto, Antonio J. Nebro, José A. Cordero, Juan José Durillo, Ismael Navas-Delgado, José Francisco Aldana-Montes:
jMetalSP: A framework for dynamic multi-objective big data optimization. Appl. Soft Comput. 69: 737-748 (2018)
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María del Mar Roldán-García, Suzan Uskudarli, Neda Barzegar Marvasti, Burak Acar, José Francisco Aldana-Montes:
Towards an ontology-driven clinical experience sharing ecosystem: Demonstration with liver cases. Expert Syst. Appl. 101: 176-195 (2018)
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Antonio J. Nebro, Ana Belen Ruiz, Cristóbal Barba-González, José García-Nieto, Mariano Luque, José Francisco Aldana-Montes:
InDM2: Interactive Dynamic Multi-Objective Decision Making Using Evolutionary Algorithms. Swarm Evol. Comput. 40: 184-195 (2018)
[c87]
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Cristian Zambrano-Vega, Antonio J. Nebro, José Francisco Aldana-Montes, Byron Oviedo:
MORPHY: A Multiobjective Software Tool for Phylogenetic Inference of Protein Coded Sequences. ICITS 2018: 719-731
[c86]
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Antonio Benítez-Hidalgo, Antonio J. Nebro, Juan José Durillo, José García-Nieto, Esteban López-Camacho, Cristóbal Barba-González, José Francisco Aldana-Montes:
About Designing an Observer Pattern-Based Architecture for a Multi-objective Metaheuristic Optimization Framework. IDC 2018: 50-60
[c85]
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Cristóbal Barba-González, José García-Nieto, Antonio Benítez-Hidalgo, Antonio J. Nebro, José Francisco Aldana-Montes:
Scalable Inference of Gene Regulatory Networks with the Spark Distributed Computing Platform. IDC 2018: 61-70
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Maciej Rybinski, William Miller, Javier Del Ser, Miren Nekane Bilbao, José Francisco Aldana-Montes:
On the Design and Tuning of Machine Learning Models for Language Toxicity Classification in Online Platforms. IDC 2018: 329-343
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Esteban López-Camacho, María Jesús García-Godoy, Javier Del Ser, Antonio J. Nebro, José Francisco Aldana-Montes:
Multi-objective Metaheuristics for a Flexible Ligand-Macromolecule Docking Problem in Computational Biology. IDC 2018: 369-379
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Cristóbal Barba-González, Vesa Ojalehto, José García-Nieto, Antonio J. Nebro, Kaisa Miettinen, José Francisco Aldana-Montes:
Artificial Decision Maker Driven by PSO: An Approach for Testing Reference Point Based Interactive Methods. PPSN (1) 2018: 274-285
[c81]
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Antonio J. Nebro, Juan José Durillo, José García-Nieto, Cristóbal Barba-González, Javier Del Ser, Carlos A. Coello Coello, Antonio Benítez-Hidalgo, José Francisco Aldana-Montes:
Extending the Speed-Constrained Multi-objective PSO (SMPSO) with Reference Point Based Preference Articulation. PPSN (1) 2018: 298-310
2017
[j36]
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Cristian Zambrano-Vega, Antonio J. Nebro, José García-Nieto, José Francisco Aldana-Montes:
M2Align: parallel multiple sequence alignment with a multi-objective metaheuristic. Bioinform. 33(19): 3011-3017 (2017)
[j35]
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David Gil, Il-Yeol Song, José Francisco Aldana-Montes, Juan Trujillo:
Big Data. New approaches of modelling and management. Comput. Stand. Interfaces 54: 61-63 (2017)
[j34]
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María del Mar Roldán-García, José García-Nieto, José Francisco Aldana-Montes:
Enhancing semantic consistency in anti-fraud rule-based expert systems. Expert Syst. Appl. 90: 332-343 (2017)
[j33]
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Cristian Zambrano-Vega, Antonio J. Nebro, Juan José Durillo, José García-Nieto, José Francisco Aldana-Montes:
Multiple Sequence Alignment with Multiobjective Metaheuristics. A Comparative Study. Int. J. Intell. Syst. 32(8): 843-861 (2017)
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Maciej Rybinski, José Francisco Aldana-Montes:
DomESA: a novel approach for extending domain-oriented lexical relatedness calculations with domain-specific semantics. J. Intell. Inf. Syst. 49(3): 315-331 (2017)
[j31]
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Cristian Zambrano-Vega, Antonio J. Nebro, José García-Nieto, José Francisco Aldana-Montes:
Comparing multi-objective metaheuristics for solving a three-objective formulation of multiple sequence alignment. Prog. Artif. Intell. 6(3): 195-210 (2017)
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Cristóbal Barba-González, José García-Nieto, Antonio J. Nebro, José Francisco Aldana-Montes:
Multi-objective Big Data Optimization with jMetal and Spark. EMO 2017: 16-30
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Antonio J. Nebro, Cristóbal Barba-González, José García-Nieto, José A. Cordero, José Francisco Aldana-Montes:
Design and architecture of the jMetaISP framework. GECCO (Companion) 2017: 1239-1246
[c78]
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Cristian Zambrano-Vega, Antonio J. Nebro, José García-Nieto, José Francisco Aldana-Montes:
A Multi-objective Optimization Framework for Multiple Sequence Alignment with Metaheuristics. IWBBIO (2) 2017: 245-256
[i2]
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Alicia Fernandez-Rovira, Rocio Lavado-Valenzuela, Miguel Ángel Guerrero-Martinez, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Melanoma expression analysis with Big Data technologies. PeerJ Prepr. 5: e3260 (2017)
2016
[j30]
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María del Mar Roldán-García, María Jesús García-Godoy, José Francisco Aldana-Montes:
Dione: An OWL representation of ICD-10-CM for classifying patients' diseases. J. Biomed. Semant. 7: 62 (2016)
[j29]
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Maciej Rybinski, José Francisco Aldana-Montes:
tESA: a distributional measure for calculating semantic relatedness. J. Biomed. Semant. 7: 67:1-67:14 (2016)
[j28]
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Carlos Roberto Brys, José Francisco Aldana-Montes:
A semantic model for electronic government and its enforcement in the Province of Misiones, Argentina. Electron. Gov. an Int. J. 12(4): 337-356 (2016)
[j27]
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María del Mar Roldán-García, José García-Nieto, José Francisco Aldana-Montes:
An ontology-based data integration approach for web analytics in e-commerce. Expert Syst. Appl. 63: 20-34 (2016)
[j26]
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Cristóbal Barba-González, José García-Nieto, Ismael Navas-Delgado, José Francisco Aldana-Montes:
A Fine Grain Sentiment Analysis with Semantics in Tweets. Int. J. Interact. Multim. Artif. Intell. 3(6): 22-28 (2016)
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Esteban López-Camacho, María Jesús García-Godoy, José García-Nieto, Antonio J. Nebro, José Francisco Aldana-Montes:
A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy. AlCoB 2016: 65-77
[c76]
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José García-Nieto, Esteban López-Camacho, María Jesús García-Godoy, Antonio J. Nebro, Juan José Durillo, José Francisco Aldana-Montes:
A Study of Archiving Strategies in Multi-objective PSO for Molecular Docking. ANTS Conference 2016: 40-52
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María Jesús García-Godoy, Esteban López-Camacho, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Re-constructing Hidden Semantic Data Models by Querying SPARQL Endpoints. DEXA (1) 2016: 405-415
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José A. Cordero, Antonio J. Nebro, Cristóbal Barba-González, Juan José Durillo, José García-Nieto, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Dynamic Multi-Objective Optimization with jMetal and Spark: A Case Study. MOD 2016: 106-117
[c73]
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Maciej Rybinski, María del Mar Roldán-García, José García-Nieto, José Francisco Aldana-Montes:
DisMatch results for OAEI 2016. OM@ISWC 2016: 161-165
2015
[j25]
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Esteban López-Camacho, María Jesús García-Godoy, José García-Nieto, Antonio J. Nebro, José Francisco Aldana-Montes:
Solving molecular flexible docking problems with metaheuristics: A comparative study. Appl. Soft Comput. 28: 379-393 (2015)
[j24]
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Ismael Navas-Delgado, María Jesús García-Godoy, Esteban López-Camacho, Maciej Rybinski, Armando Reyes-Palomares, Miguel Angel Medina, José Francisco Aldana-Montes:
kpath: integration of metabolic pathway linked data. Database J. Biol. Databases Curation 2015 (2015)
[j23]
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Fernando Sánchez, Samuel Benavides, Fernando Moreno, Guillermo Garzón, María del Mar Roldán-García, Ismael Navas-Delgado, José Francisco Aldana-Montes:
A Repository of Semantic Open EHR Archetypes. Int. J. Interact. Multim. Artif. Intell. 3(2): 57-62 (2015)
[c72]
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Neda Barzegar Marvasti, María del Mar Roldán-García, Suzan Üsküdarli, José Francisco Aldana-Montes, Burak Acar:
Overview of the ImageCLEF 2015 liver CT annotation task. CLEF (Working Notes) 2015
[c71]
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Mauricio Villegas, Henning Müller, Andrew Gilbert, Luca Piras, Josiah Wang, Krystian Mikolajczyk, Alba Garcia Seco de Herrera, Stefano Bromuri, M. Ashraful Amin, Mahmood Kazi Mohammed, Burak Acar, Suzan Üsküdarli, Neda Barzegar Marvasti, José Francisco Aldana-Montes, María del Mar Roldán-García:
General Overview of ImageCLEF at the CLEF 2015 Labs. CLEF 2015: 444-461
[c70]
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Carlos Roberto Brys, José Francisco Aldana-Montes, David Luis La Red Martínez:
Un Modelo Ontológico para el Gobierno Electrónico de la Provincia de Misiones, Argentina. SAOA@JAIIO 2015: 81-90
2014
[j22]
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Esteban López-Camacho, María Jesús García-Godoy, Antonio J. Nebro, José Francisco Aldana-Montes:
jMetalCpp: optimizing molecular docking problems with a C++ metaheuristic framework. Bioinform. 30(3): 437-438 (2014)
[j21]
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Maciej Rybinski, José Francisco Aldana-Montes:
Calculating semantic relatedness for biomedical use in a knowledge-poor environment. BMC Bioinform. 15(S-14): S2 (2014)
[j20]
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Ismael Navas-Delgado, José Francisco Aldana-Montes:
BioSStore: A Client Interface for a Repository of Semantically Annotated Bioinformatics Web Services. Open J. Semantic Web 1(1): 19-29 (2014)
2013
[j19]
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María Jesús García-Godoy, Esteban López-Camacho, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Sharing and executing linked data queries in a collaborative environment. Bioinform. 29(13): 1663-1670 (2013)
[j18]
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Jorge Martinez-Gil, José Francisco Aldana-Montes:
Semantic similarity measurement using historical google search patterns. Inf. Syst. Frontiers 15(3): 399-410 (2013)
[c69]
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Dimitrios Dervos, José Francisco Aldana-Montes, Martti Laiho, Päivi Riihelä:
A DBTechNet project for VET teacher training on database SQL transactions. BCI 2013: 149-155
2012
[j17]
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Abdelaali Briache, Kamar Marrakchi, Amine Kerzazi, Ismael Navas-Delgado, Badr Din Rossi Hassani, Khalid Lairini, José Francisco Aldana-Montes:
Transparent mediation-based access to multiple yeast data sources using an ontology driven interface. BMC Bioinform. 13(S-1): S7 (2012)
[j16]
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Jorge Martinez-Gil, José Francisco Aldana-Montes:
KnoE: A Web Mining Tool to Validate Previously Discovered Semantic Correspondences. J. Comput. Sci. Technol. 27(6): 1222-1232 (2012)
[j15]
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Jorge Martinez-Gil, Ismael Navas-Delgado, José Francisco Aldana-Montes:
MaF: An Ontology Matching Framework. J. Univers. Comput. Sci. 18(2): 194-217 (2012)
[j14]
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Jorge Martinez-Gil, José Francisco Aldana-Montes:
An overview of current ontology meta-matching solutions. Knowl. Eng. Rev. 27(4): 393-412 (2012)
[j13]
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Jorge Martinez-Gil, José Francisco Aldana-Montes:
Smart Combination of Web Measures for Solving Semantic Similarity Problems. Online Inf. Rev. 36(5): 724-738 (2012)
[c68]
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María del Mar Roldán-García, José Francisco Aldana-Montes:
Evaluating DBOWL: A Non-materializing OWL Reasoner based on Relational Database Technology. ORE 2012
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Ismael Navas-Delgado, María Jesús García-Godoy, José Francisco Aldana-Montes:
Metabolic Pathway Data and Application Integration. PAAMS (Workshops) 2012: 133-140
[c66]
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Chrysostomos Tsoukalas, Dimitrios Dervos, Jorge Martinez-Gil, José Francisco Aldana-Montes:
TheMa: An API for Mining Linked Datasets. Panhellenic Conference on Informatics 2012: 449-453
2011
[j12]
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Ismael Navas-Delgado, Alejandro Real-Chicharro, Miguel Angel Medina, Francisca Sánchez-Jiménez, José Francisco Aldana-Montes:
Social pathway annotation: extensions of the systems biology metabolic modelling assistant. Briefings Bioinform. 12(6): 576-587 (2011)
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Jorge Martinez-Gil, José Francisco Aldana-Montes:
Evaluation of two heuristic approaches to solve the ontology meta-matching problem. Knowl. Inf. Syst. 26(2): 225-247 (2011)
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David Urdiales-Nieto, José Francisco Aldana-Montes:
Towards designing an efficient crawling window to analysis and annotate changes in linked data sources. EDBT/ICDT Workshop on Linked Web Data Management 2011: 9-16
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María Jesús García-Godoy, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Bioqueries: a social community sharing experiences while querying biological linked data. SWAT4LS 2011: 24-31
2010
[j10]
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Jorge Martinez-Gil, José Francisco Aldana-Montes:
Reverse ontology matching. SIGMOD Rec. 39(4): 5-11 (2010)
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Martti Laiho, Dimitrios Dervos, José Francisco Aldana-Montes, Fritz Laux:
DBTech EXT: Education and Hands-On Training for the Database Professional. ADBIS 2010: 15-22
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Jorge Martinez-Gil, Enrique Alba, José Francisco Aldana-Montes:
Statistical Study about Existing OWL Ontologies from a Significant Sample as Previous Step for their Alignment. CISIS 2010: 980-985
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Kamar Marrakchi, Abdelaali Briache, Amine Kerzazi, Ismael Navas-Delgado, José Francisco Aldana-Montes, Mohamed Ettayebi, Khalid Lairini, Badr Din Rossi Hassani:
A Data Warehouse Approach to Semantic Integration of Pseudomonas Data. DILS 2010: 90-105
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María Jesús García-Godoy, Ismael Navas-Delgado, José Francisco Aldana-Montes:
SB-KOM: Integration of Pathway Information with BioPax. JBI 2010: 50-65
[c59]
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Jorge Martinez-Gil, José Francisco Aldana-Montes:
Evaluation of two heuristic approaches to solve the ontology meta-matching problem. JISBD 2010: 219-219
[c58]
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María del Mar Roldán-García, Ismael Navas-Delgado, Amine Kerzazi, Othmane Chniber, Joaquin J. Molina-Castro, José Francisco Aldana-Montes:
KA-SB: from data integration to large scale reasoning. JISBD 2010: 221-221
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David Urdiales-Nieto, José Francisco Aldana-Montes:
A More Specific Events Classification to Improve Crawling Techniques. OTM Workshops 2010: 616-625
[c56]
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Manuela Ruiz-Montiel, Joaquin J. Molina-Castro, José Francisco Aldana-Montes:
TasTicWiki: A Semantic Wiki with Content Recommendation. SemWiki@ESWC 2010
[c55]
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Abdelaali Briache, Kamar Marrakchi, Amine Kerzazi, Ismael Navas-Delgado, José Francisco Aldana-Montes, Badr Din Rossi Hassani, Khalid Lairini:
YeastMed: an XML-Based System for Biological Data Integration of Yeast. SWAT4LS 2010
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Abdelaali Briache, Kamar Marrakchi, Amine Kerzazi, Ismael Navas-Delgado, José Francisco Aldana-Montes, Badr Din Rossi Hassani, Khalid Lairini:
YeastMed: an XML-Based System for Biological Data Integration of Yeast. CoRR abs/1012.1621 (2010)

2000 – 2009

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2009
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Armando Reyes-Palomares, Raúl Montañez, Alejandro Real-Chicharro, Othmane Chniber, Amine Kerzazi, Ismael Navas-Delgado, Miguel Angel Medina, José Francisco Aldana-Montes, Francisca Sánchez-Jiménez:
Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling. Bioinform. 25(6): 834-835 (2009)
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María del Mar Roldán-García, Ismael Navas-Delgado, Amine Kerzazi, Othmane Chniber, Joaquin J. Molina-Castro, José Francisco Aldana-Montes:
KA-SB: from data integration to large scale reasoning. BMC Bioinform. 10(S-10): 5 (2009)
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Alejandro Real-Chicharro, Iván Ruiz Mostazo, Ismael Navas-Delgado, Amine Kerzazi, Othmane Chniber, Francisca Sánchez-Jiménez, Miguel Angel Medina, José Francisco Aldana-Montes:
Protopia: a protein-protein interaction tool. BMC Bioinform. 10(S-12): 17 (2009)
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Antonio J. Roa-Valverde, José Francisco Aldana-Montes:
Towards a Scalable Infrastructure for Semantic Web Services Execution. J. Softw. 4(8): 821-832 (2009)
[j5]
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Ismael Navas-Delgado, José Francisco Aldana-Montes:
Extending SD-Core for Ontology-based Data Integration. J. Univers. Comput. Sci. 15(17): 3201-3230 (2009)
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Ismael Navas-Delgado, María del Mar Roldán-García, José Francisco Aldana-Montes:
Semantic Fields: Finding Ontology Relationships. DEXA 2009: 427-434
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María del Mar Roldán-García, José Francisco Aldana-Montes:
Complete OWL-DL Reasoning Using Relational Databases. DEXA 2009: 435-442
[c52]
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Antonio J. Roa-Valverde, Jorge Martinez-Gil, José Francisco Aldana-Montes:
Boosting Annotated Web Services in SAWSDL. IWANN (2) 2009: 67-74
[c51]
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Manuela Ruiz-Montiel, José Francisco Aldana-Montes:
Semantically Enhanced Recommender Systems. OTM Workshops 2009: 604-609
[c50]
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David Urdiales-Nieto, Jorge Martinez-Gil, José Francisco Aldana-Montes:
MaSiMe: A Customized Similarity Measure and Its Application for Tag Cloud Refactoring. OTM Workshops 2009: 937-946
[c49]
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Amine Kerzazi, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Towards an Ontology-based Mediation Framework for Integrating Biological Data. SWAT4LS 2009
2008
[j4]
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Ismael Navas-Delgado, Raúl Montañez, Almudena Pino-Ángeles, Aurelio A. Moya-García, José Luis Urdiales, Francisca Sánchez-Jiménez, José Francisco Aldana-Montes:
AMMO-Prot: amine system project 3D-model finder. BMC Bioinform. 9(S-4) (2008)
[c48]
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Jorge Martinez-Gil, Ismael Navas-Delgado, Antonio Polo Márquez, José Francisco Aldana-Montes:
Comparison of Textual Renderings of Ontologies for Improving Their Alignment. CISIS 2008: 871-876
[c47]
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María del Mar Roldán-García, Joaquin J. Molina-Castro, José Francisco Aldana-Montes:
ECQ: A Simple Query Language for the Semantic Web. DEXA Workshops 2008: 190-194
[c46]
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María del Mar Roldán-García, José Francisco Aldana-Montes:
DBOWL: Towards a Scalable and Persistent OWL Reasoner. ICIW 2008: 174-179
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Ismael Navas-Delgado, Amine Kerzazi, Othmane Chniber, José Francisco Aldana-Montes:
VSB: The Visual Semantic Browser. KES (3) 2008: 269-276
[c44]
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Ismael Navas-Delgado, José Francisco Aldana-Montes:
SD-Core: Generic Semantic Middleware Components for the Semantic Web. KES (2) 2008: 617-622
[c43]
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Antonio J. Roa-Valverde, José Francisco Aldana-Montes:
Extending ESB for Semantic Web Services Understanding. OTM Workshops 2008: 957-964
[c42]
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Ismael Navas-Delgado, Amine Kerzazi, Othmane Chniber, José Francisco Aldana-Montes:
SD-Core: A Semantic Middleware Applied to Molecular Biology. OTM Workshops 2008: 976-985
[c41]
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Jorge Martinez-Gil, Enrique Alba, José Francisco Aldana-Montes:
Optimizing Ontology Alignments by Using Genetic Algorithms. NatuReS 2008
[c40]
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Amine Kerzazi, Ismael Navas-Delgado, José Francisco Aldana-Montes, Othmane Chniber:
A Semantic Mediation Architecture for RDF Data Integration. SWAP 2008
[c39]
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María del Mar Roldán-García, Joaquin J. Molina-Castro, José Francisco Aldana-Montes:
A Protégé Plugin for Querying and Reasoning on Persistent OWL Ontologies. SWAP 2008
[c38]
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María del Mar Roldán-García, Ismael Navas-Delgado, Amine Kerzazi, Othmane Chniber, Joaquin J. Molina-Castro, José Francisco Aldana-Montes:
KASBi: Knowledge-Based Analysis in Systems Biology. SWAT4LS 2008
[p3]
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Ismael Navas-Delgado, Raúl Montañez, Miguel Angel Medina, José Luis Urdiales, José Francisco Aldana-Montes, Francisca Sánchez-Jiménez:
The Amine System Project: Systems Biology in Practice. Computational Intelligence in Bioinformatics 2008: 277-292
2006
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Ismael Navas-Delgado, Maria del Mar Rojano-Muñoz, Sergio Ramírez, Antonio J. Pérez-Pulido, Eduardo Andrés León, José Francisco Aldana-Montes, Oswaldo Trelles:
Intelligent client for integrating bioinformatics services. Bioinform. 22(1): 106-111 (2006)
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José Francisco Aldana-Montes, M. Roldán-Castro, Ismael Navas-Delgado, María del Mar Roldán-García, Manuel Hidalgo-Conde, Oswaldo Trelles:
Bio-Broker: a tool for integration of biological data sources and data analysis tools. Softw. Pract. Exp. 36(14): 1585-1604 (2006)
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Ismael Navas-Delgado, Antonio J. Pérez-Pulido, José Francisco Aldana-Montes, Oswaldo Trelles:
Distributed Execution of Workflows in the INB. DILS 2006: 224-231
[c36]
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Ismael Navas-Delgado, José Francisco Aldana-Montes, Oswaldo Trelles:
Distributed Execution of Workflows. International Conference on Computational Science (3) 2006: 936-939
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María del Mar Roldán-García, José Francisco Aldana-Montes:
A Survey on Disk Oriented Querying and Reasoning on the Semantic Web. ICDE Workshops 2006: 58
[c34]
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Antonio Brogi, Sara Corfini, José Francisco Aldana-Montes, Ismael Navas-Delgado:
Automated Discovery of Compositions of Services Described with Separate Ontologies. ICSOC 2006: 509-514
[c33]
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Antonio Brogi, Sara Corfini, José Francisco Aldana-Montes, Ismael Navas-Delgado:
A Prototype for Discovering Compositions of Semantic Web Services. SWAP 2006
2005
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Ismael Navas-Delgado, Ismael Sanz, José Francisco Aldana-Montes, Rafael Berlanga Llavori:
Automatic Generation of Semantic Fields for Resource Discovery in the Semantic Web. DEXA 2005: 706-715
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Ismael Navas-Delgado, Carlos Rodríguez-Caso, María del Mar Roldán-García, Miguel Angel Medina, José Francisco Aldana-Montes:
A semantic tool for analyzing interaction among transcription factors. IADIS AC 2005: 512-518
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José Francisco Aldana-Montes, Manuel Hidalgo-Conde, Ismael Navas-Delgado, María del Mar Roldán-García, Oswaldo Trelles:
Bio-Broker: a biological data and services mediator system. IADIS AC 2005: 527-534
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María del Mar Roldán-García, Ismael Navas-Delgado, José Francisco Aldana-Montes:
A Design Methodology for Semantic Web Database-Based Systems. ICITA (1) 2005: 233-237
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Ismael Navas-Delgado, Maria del Mar Rojano-Muñoz, José Francisco Aldana-Montes:
Arquitectura para la Clasificación y Composición de Servicios Web. JISBD 2005: 283-288
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María del Mar Roldán-García, José Francisco Aldana-Montes:
A Tool for Storing OWL Using Database Technology. OWLED 2005
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Sergio Ramírez, Enrique de-Andrés, Ismael Navas-Delgado, Antonio J. Pérez-Pulido, José Francisco Aldana-Montes, Oswaldo Trelles:
Services Integration and Task-scheduling in Bioinformatics Grids. PARCO 2005: 735-742
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José Francisco Aldana-Montes, Antonio C. Gomez Lora, Nathalie Moreno Vergara, Ismael Navas-Delgado, María del Mar Roldán-García:
Database Technologies on the Web. Encyclopedia of Information Science and Technology (II) 2005: 745-749
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María del Mar Roldán-García, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Applying Database Techniques to the Semantic Web. Encyclopedia of Database Technologies and Applications 2005: 18-22
2004
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Ismael Navas-Delgado, María del Mar Roldán-García, José Francisco Aldana-Montes:
Kreios: Towards Semantic Interoperable Systems. ADVIS 2004: 161-171
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José Francisco Aldana-Montes, Manuel Hidalgo-Conde, Ismael Navas-Delgado, María del Mar Roldán-García, Pedro A. de Alarcón, Oswaldo Trelles:
An Open Architecture for the Dynamic Integration of Biological Data Sources. CCCT (1) 2004: 239-244
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Ismael Navas-Delgado, Nathalie Moreno Vergara, Antonio C. Gomez Lora, María del Mar Roldán-García, Iván Ruiz Mostazo, José Francisco Aldana-Montes:
Embedding Semantic Annotations into Dynamic Web Contents. DEXA Workshops 2004: 231-235
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Ismael Navas-Delgado, José Francisco Aldana-Montes:
Towards Conceptual Mediation: A Semantic Architecture For Dynamic Integration of Heterogeneous Databases. ICEIS (1) 2004: 169-176
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José Francisco Aldana-Montes, Ismael Navas-Delgado, María del Mar Roldán-García:
Semantic Integration of Digital Libraries. ICEIS (5) 2004: 313-318
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José Francisco Aldana-Montes, Ismael Navas-Delgado, María del Mar Roldán-García:
Solving Queries over Semantically Integrated Biological Data Sources. WAIM 2004: 249-258
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Ismael Navas-Delgado, María del Mar Roldán-García, José Francisco Aldana-Montes:
Deep Crawling in the Semantic Web: In Search of Deep Knowledge. WISE 2004: 541-546
2003
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Nathalie Moreno Vergara, Ismael Navas-Delgado, José Francisco Aldana-Montes:
Putting the Semantic Web to Work with DB Technology. IEEE Data Eng. Bull. 26(4): 49-54 (2003)
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José Francisco Aldana-Montes, Nathalie Moreno Vergara, Ismael Navas-Delgado:
Anotación Semántica de Documentos Web. JISBD 2003: 551-562
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José Francisco Aldana-Montes, Ismael Navas-Delgado, María del Mar Roldán-García:
Arquitectura para la Mediación Semántica. JISBD 2003: 563-572
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José Francisco Aldana-Montes, Antonio C. Gomez Lora, Nathalie Moreno Vergara, María del Mar Roldán-García:
Database Management Issues in the Web Environment. Effective Databases for Text & Document Management 2003: 109-134
2002
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José Francisco Aldana-Montes, Manuel Gómez, Nathalie Moreno Vergara, María del Mar Roldán-García:
Implicaciones del tipo de parser en la evaluación consultas Xquery. JISBD 2002: 213-222
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José Francisco Aldana-Montes, Mariemma Inmaculada Yagüe del Valle, Antonio C. Gomez Lora:
Integrity Issues in the Web: Beyond Distributed Databases. Database Integrity 2002: 293-321
2001
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José Francisco Aldana-Montes, Antonio C. Gomez Lora, María del Mar Roldán-García:
Semicomposición Distribuida. JISBD 2001: 55-68

1990 – 1999

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1999
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José Francisco Aldana-Montes, Antonio C. Gomez Lora:
Revisando las Téchnicas de Optimización de Consultas Recursivas Mediante la Propagación de Semicomposiciones. JISBD 1999: 123-134
1998
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José Francisco Aldana-Montes, Mariemma Inmaculada Yagüe del Valle:
Querying the Web with Datalog. IADT 1998: 499-504
1997
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José Francisco Aldana-Montes, José M. Troya:
Concurrent Smart Evaluation of Datalog Queries. APPIA-GULP-PRODE 1997: 163-174
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José Francisco Aldana-Montes, Mariemma Inmaculada Yagüe del Valle:
Recuperación de Información en la WWW: D³Web. JIDBD 1997: 31-40
1996
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José Francisco Aldana-Montes, José M. Troya:
Data Flow Evaluation of Datalog Queries. DDLP 1996: 69-78
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José Francisco Aldana-Montes, José M. Troya:
Data Flow Parallel Evaluation of Datalog Queries. JIDBD 1996: 151-159
1995
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Carlos Cotta, José Francisco Aldana-Montes, Antonio J. Nebro, José M. Troya:
Hybridizing Genetic Algorithms with Branch and Bound Techniques for the Resolution of the TSP. ICANNGA 1995: 277-280
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Lidia Fuentes, José Francisco Aldana-Montes, José M. Troya:
GENESIS: An Object-Oriented Framework for Simulation of Neural Network Models. ICANNGA 1995: 321-324
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Enrique Alba, José Francisco Aldana-Montes, José M. Troya:
A Genetic Algorithm for Load Balancing in Parallel Query Evaluation for Deductive Relational Data Bases. ICANNGA 1995: 479-482
1994
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José Francisco Aldana-Montes, Enrique Alba, José M. Troya:
D2: A Model for Datalog Parallel Evaluation. GULP-PRODE (2) 1994: 60-74
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José Francisco Aldana-Montes, Enrique Alba, José M. Troya:
Load Balancing and Query Optimization in DataFlow Parallel Evaluation of Datalog Programs. ICPADS 1994: 682-689
1993
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Lidia Fuentes, José Francisco Aldana-Montes, José M. Troya:
URANO: An Object-Oriented Artificial Neural Network Simulation Tool. IWANN 1993: 364-369
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Enrique Alba, José Francisco Aldana-Montes, José M. Troya:
Full Automatic ANN Design: A Genetic Approach. IWANN 1993: 399-404
1991
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José M. Troya, José Francisco Aldana-Montes:
Extending an Object Oriented Concurrent Logic Language for Neural Network Simulations. IWANN 1991: 235-242

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