Search results

Finding cutoff of optimal number of Highly deviance genes

Status: Open.

#26 In kstreet13/scry;

· Rohit-Satyam opened on Jun 29, 2025

No genes names when computing devianceFeatureSelection() with batch

Status: Open.

#25 In kstreet13/scry;

· Alexis-Varin opened on Jul 6, 2024

Stability issues and warnings in 10x Genomics Visium data

Status: Open.

#17 In kstreet13/scry;

· lmweber opened on Mar 9, 2022

Experiences with the book, round 2

Status: Open.

#15 In kstreet13/scry;

· LTLA opened on Aug 15, 2020

Negative binomial null residuals

Status: Open.

#14 In kstreet13/scry;

· willtownes opened on Aug 14, 2020

Including covariates with nullResiduals()

Status: Open.

#13 In kstreet13/scry;

· johnchamberlin opened on Aug 13, 2020

Benchmark scry using in-memory vs <code>DelayedArray</code> objects

Status: Open.

#11 In kstreet13/scry;

· stephaniehicks opened on Jul 3, 2020

cache sizeFactors in SingleCellExperiment slot

Status: Open.

#9 In kstreet13/scry;

· willtownes opened on Jun 12, 2020

Experiences from trying to get GLMPCA to run with the book

Status: Open.

#7 In kstreet13/scry;

· LTLA opened on Jun 1, 2020

Null residuals with HDF5/DelayedArray/Matrix matrices

Status: Open.

#6 In kstreet13/scry;

· drisso opened on May 16, 2020

Assay should default to <code>counts</code> in <code>SummarizedExperiment</code> objects

Status: Open.

#5 In kstreet13/scry;

· drisso opened on May 16, 2020

Store GLM-PCA factors as LinearEmbeddingMatrix in SingleCellExperiment

Status: Open.

#3 In kstreet13/scry;

· willtownes opened on Feb 20, 2020