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cager
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Spam:
Can I cancel my British Airways flight and get a refund?
CAGEr
gep2pep
hcg110.db
3 months ago
Haggu
10
6
votes
8
replies
1.8k
views
CAGEr bug report: wrong consensus cluster results
CAGEr
updated 24 months ago by
Charles Plessy
▴ 180 • written 2.6 years ago by
Meng
▴ 30
0
votes
3
replies
1.4k
views
CAGEr: Problem when running getCTSS
CAGEr
updated 3.7 years ago by
Charles Plessy
▴ 180 • written 3.9 years ago by
Sergio
• 0
1
vote
2
replies
1.2k
views
CAGEexp vs CAGErseq
CAGEr
updated 3.7 years ago by
Charles Plessy
▴ 180 • written 4.2 years ago by
MatteoP
▴ 10
0
votes
0
replies
662
views
CAGEr consensusClustersDESeq2()
CAGEr
4.2 years ago
MatteoP
▴ 10
0
votes
5
replies
1.5k
views
CAGEr promoter width graph
CAGEr
updated 3.8 years ago by
Charles
• 0 • written 4.8 years ago by
leehami7407
• 0
1
vote
4
replies
1.2k
views
CAGEr quantilePositions() takes forever to run
CAGEr
quantilePositions
5.1 years ago
mirkocelii
▴ 40
1
vote
6
replies
1.7k
views
Behaviour of getCTSS on a CAGEset - extra reads?
cager
cage
ctss
updated 5.2 years ago by
Charles Plessy
▴ 180 • written 6.0 years ago by
sarac
▴ 20
1
vote
3
replies
1.2k
views
CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr
CAGEset
quantile
CAGEexp
5.2 years ago
mirkocelii
▴ 40
4
votes
6
replies
1.7k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
5.2 years ago
mirkocelii
▴ 40
2
votes
5
replies
1.7k
views
Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of the clustered tags into the resultant cluster?
CTSS clustering
tag per million
tag counts
CAGEr
updated 3.6 years ago by
Charles Plessy
▴ 180 • written 6.1 years ago by
regcastillo1990
• 0
0
votes
0
replies
1.3k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
6.6 years ago
bharata1803
▴ 60
0
votes
1
reply
1.2k
views
a problem from import CTSStable in CAGEr
cager
CAGEr
6.7 years ago
Zhong JW
• 0
1
vote
2
replies
1.6k
views
error: getCTSS from CAGEexp class with removeFirstG=TRUE
cager
6.7 years ago
Pengcheng Yang
▴ 60
9
votes
18
replies
3.1k
views
bam2CTSS function error from CAGEr package
cager
6.8 years ago • updated 6.7 years ago
Pengcheng Yang
▴ 60
4
votes
5
replies
1.6k
views
no import.bam function in CAGEr version 1.22.3
cager
6.8 years ago
Pengcheng Yang
▴ 60
1
vote
1
reply
1.2k
views
CAGEr: consensusCluster doesn't have dominant CTSS info
cager
7.1 years ago
Jingwen
▴ 10
0
votes
1
reply
1.4k
views
CAGEr - How to change plot axis range in CAGEr
BRAIN
CAGEr
BRAIN
CAGEr
updated 7.2 years ago by
Charles Plessy
▴ 180 • written 10.9 years ago by
Tobias Hohenauer
▴ 10
1
vote
1
reply
1.3k
views
clusterCTSS() error when running CAGEr
CAGEr
updated 7.7 years ago by
Charles Plessy
▴ 180 • written 7.7 years ago by
bo_yan
▴ 10
2
votes
8
replies
2.6k
views
CAGEr BAM files size issue
CAGEr
BAM
software error
R
biostrings
updated 7.9 years ago by
Charles Plessy
▴ 180 • written 8.0 years ago by
orzechowska.mag
▴ 10
4
votes
5
replies
2.6k
views
CAGEr : problem while filtering the bamFile
CAGEr
cage
updated 3.8 years ago by
jingxian.18
• 0 • written 9.4 years ago by
Vivek.b
▴ 100
0
votes
1
reply
1.3k
views
Scale Y-axis in "plotInterquantileWidth" function for an easier comparison between conditions
CAGEr
updated 10.4 years ago by
James W. MacDonald
68k • written 10.4 years ago by
calibula2000
• 0
22 results • Page
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Comment: Heatmap of the Count Matrix
by
gta5movilecom
• 0
Using it for the top 20 genes in the heatmap highlights high-expression genes, but may miss out on variance-driven patterns. If you want to…
Answer: Regarding the issue of background genes in enrichment analysis
by
ATpoint
★ 4.9k
It should imo be the genes that were eligable to yield a "significant" result in your analysis. So, if you test set is derived from differe…
Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
by
Gordon Smyth
52k
> How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()? Exactly the same. Both soft…
Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
by
anni
• 0
Ok, thanks! I have just a couple more questions: 1. Based on the [limma User's Guide][1], for binary predictors like overweight, I have i…
Comment: Online workshop "Working with ChatGPT in R" 2023-03-09
by
tnaru607
• 0
Thanks for sharing your workflow and benchmarking approach - very informative! I've been experimenting with AI-assisted tools recently, es…
Votes
Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2
I would like to perform differential expression analysis of lncRNAs using DESeq2 and edgeR.
Answer: ExperimentHub full metadata
Answer: AnnotationHub/ExperimentHub resources backup
Answer: ExperimentHub full metadata
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