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Showing :
experimenthub
•
reset
2
votes
1
reply
1.5k
views
ExperimentHub full metadata
ExperimentHub
updated 7 days ago by
shepherl
4.2k • written 8 days ago by
igor
▴ 50
3
votes
3
replies
419
views
AnnotationHub/ExperimentHub resources backup
AnnotationHub
HubPub
ExperimentHub
updated 7 weeks ago by
James W. MacDonald
68k • written 7 weeks ago by
igor
▴ 50
0
votes
5
replies
1.8k
views
Cannot connect to annotationhub server
AnnotationHub
ExperimentHub
updated 12 months ago by
shepherl
4.2k • written 12 months ago by
Mishaal Irfan
• 0
0
votes
0
replies
494
views
News:
AnnotationHub and ExperimentHub Access Downtime
AnnotationHub
ExperimentHub
12 months ago
shepherl
4.2k
1
vote
1
reply
564
views
Documenting resources in an `ExperimentHub` package?
AnnotationHub
ExperimentHub
updated 13 months ago by
James W. MacDonald
68k • written 13 months ago by
Tim Barry
• 0
6
votes
12
replies
8.2k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
20 months ago • updated 14 months ago
shepherl
4.2k
0
votes
4
replies
692
views
Storing directories inside an ExperimentHub package?
ExperimentHub
15 months ago
Tim Barry
• 0
1
vote
5
replies
3.7k
views
Cannot connect to ExperimentHub server
ExperimentHub
updated 14 months ago by
Jiayu
• 0 • written 19 months ago by
yanling
• 0
0
votes
1
reply
1.4k
views
scRNAseq package and cell type annotations
ExperimentHub
R
ExperimentHubData
scRNAseq
SingleR
updated 2.3 years ago by
Peter Hickey
▴ 760 • written 2.3 years ago by
cathalgking
▴ 10
0
votes
3
replies
1.0k
views
Can I create my own, private ExperimentHub instance?
ExperimentHub
2.9 years ago
sandmann.t
▴ 70
0
votes
1
reply
1.5k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
4.3 years ago
shepherl
4.2k
8
votes
33
replies
5.2k
views
Unable to download hg19.generanges as part of DMRcatedata package
DMRacte
DMRcateranges
ExperimentHub
hg19.generanges
updated 4.5 years ago by
friedmanhiccc
▴ 10 • written 4.8 years ago by
richardallenfriedmanbrooklyn
▴ 30
8
votes
16
replies
9.1k
views
Cannot connect to ExperimentHub server
ExperimentHub
AnnotationHub
SingleR
updated 4.9 years ago by
shepherl
4.2k • written 4.9 years ago by
enricoferrero
▴ 680
2
votes
2
replies
1.0k
views
ExperimentHub downloading files to home directory (~)
ExperimentHub
updated 6.3 years ago by
shepherl
4.2k • written 6.3 years ago by
story.benjamin
▴ 20
4
votes
10
replies
2.5k
views
Can't access devel version of ExperimentHub in Travis CI
experimenthub
continuous-integration
6.8 years ago
Kyle Johnsen
▴ 30
1
vote
1
reply
1.0k
views
What is the function of the 'make-metadata.R' script when making a ExperimentHub package?
experimenthub
updated 6.8 years ago by
shepherl
4.2k • written 6.9 years ago by
Kyle Johnsen
▴ 30
0
votes
7
replies
3.0k
views
ExperimentHub wackiness (which breaks packages that depend upon experimentHub-provided *data pkgs)
experimenthub
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
Tim Triche
★ 4.2k
5
votes
4
replies
1.8k
views
Eliminating repetitive calls to ExperimentHub
experimenthub
annotationhub
large dataset
7.2 years ago
slinker
▴ 20
5
votes
2
replies
2.4k
views
Setting ExperimentHub Cache Location
experimenthub
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Mike Smith
★ 6.6k
5
votes
11
replies
3.5k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 8.6 years ago by
Levi Waldron
★ 1.1k • written 8.6 years ago by
morganx
▴ 10
5
votes
3
replies
1.9k
views
ExperimentHub()[["EH359"]] has character expression values
ExperimentHub
curatedMetagenomicData
updated 8.6 years ago by
Lucas Schiffer
▴ 240 • written 8.7 years ago by
Wolfgang Huber
★ 13k
2
votes
1
reply
1.5k
views
ExperimentHub - Error: database is corrupt
ExperimentHub
8.7 years ago
francois.collin
• 0
4
votes
7
replies
2.2k
views
AnnotationHub and ExperimentHub make "~" directory in my home
annotationhub
experimenthub
updated 8.9 years ago by
Valerie Obenchain
★ 6.8k • written 8.9 years ago by
Michael Love
43k
0
votes
2
replies
1.8k
views
Getting "error: database is corrupt" when using ExperimentHub()
experimenthub
gse62944
updated 9.0 years ago by
Valerie Obenchain
★ 6.8k • written 9.0 years ago by
shinx558
• 0
24 results • Page
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Comment: Heatmap of the Count Matrix
by
gta5movilecom
• 0
Using it for the top 20 genes in the heatmap highlights high-expression genes, but may miss out on variance-driven patterns. If you want to…
Answer: Regarding the issue of background genes in enrichment analysis
by
ATpoint
★ 4.9k
It should imo be the genes that were eligable to yield a "significant" result in your analysis. So, if you test set is derived from differe…
Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
by
Gordon Smyth
52k
> How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()? Exactly the same. Both soft…
Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
by
anni
• 0
Ok, thanks! I have just a couple more questions: 1. Based on the [limma User's Guide][1], for binary predictors like overweight, I have i…
Comment: Online workshop "Working with ChatGPT in R" 2023-03-09
by
tnaru607
• 0
Thanks for sharing your workflow and benchmarking approach - very informative! I've been experimenting with AI-assisted tools recently, es…
Votes
Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2
I would like to perform differential expression analysis of lncRNAs using DESeq2 and edgeR.
Answer: ExperimentHub full metadata
Answer: AnnotationHub/ExperimentHub resources backup
Answer: ExperimentHub full metadata
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