Showing : heatmaps • reset
2
votes
5
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1.1k
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Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 7 weeks ago by ▴ 110 • written 7 weeks ago by ▴ 10
1
vote
5
replies
1.2k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 8 weeks ago by 68k • written 9 weeks ago by ▴ 10
0
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2
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790
views
DESeq2 Heatmap
heatmaps
updated 6 months ago by ★ 1.4k • written 6 months ago by • 0
0
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3
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1.5k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 9 months ago by 68k • written 9 months ago by ▴ 50
1
vote
5
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2.0k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 11 months ago by • 0
2
votes
1
reply
1.4k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 11 months ago by ★ 4.9k • written 11 months ago by • 0
0
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0
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374
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Error in drawHeatmap function
GeneOverlap heatmaps
13 months ago Johanna • 0
0
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2
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1.2k
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 13 months ago by 68k • written 13 months ago by • 0
0
votes
1
reply
2.4k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 20 months ago by ▴ 780 • written 20 months ago by • 0
0
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1
reply
2.5k
views
edgeR heatmap construction and interpretation
heatmaps
updated 21 months ago by 52k • written 21 months ago by • 0
0
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3
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1.2k
views
Installing Gpart
gpart heat heatmaps
updated 21 months ago by 68k • written 21 months ago by • 0
0
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2
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1.2k
views
Drawing a heatmap with only limited genes
heatmaps
updated 2.1 years ago by • 0 • written 2.1 years ago by • 0
1
vote
1
reply
848
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.3 years ago by ▴ 90 • written 2.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.4 years ago by ★ 4.9k • written 2.4 years ago by • 0
0
votes
2
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1.6k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.4 years ago shuangshuang • 0
0
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0
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1.4k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.4 years ago gianni.drm • 0
0
votes
1
reply
1.2k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.4 years ago by ★ 4.9k • written 2.4 years ago by ▴ 10
2
votes
3
replies
1.8k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.5 years ago by ▴ 40 • written 2.5 years ago by ▴ 10
2
votes
2
replies
1.1k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.5 years ago Sooni ▴ 10
4
votes
5
replies
6.2k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.4 years ago by 52k • written 2.6 years ago by ▴ 10
2
votes
5
replies
2.5k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.6 years ago Katharina • 0
0
votes
1
reply
4.1k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.7 years ago by 43k • written 2.8 years ago by • 0
0
votes
3
replies
2.1k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
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1
reply
2.4k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.9 years ago by ▴ 290 • written 2.9 years ago by • 0
1
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1
reply
1.5k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
votes
2
replies
8.0k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.1 years ago • updated 3.0 years ago Bhavana • 0
0
votes
3
replies
1.9k
views
Persisting error in making a heatmap
heatmaps gplots
3.1 years ago beslinail • 0
1
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1
reply
1.2k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
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1
reply
1.6k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.9 years ago by ▴ 40 • written 3.9 years ago by • 0
0
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2
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2.3k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.1 years ago Clara ▴ 10
0
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1
reply
3.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by ▴ 10
1
vote
1
reply
1.2k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.4 years ago by 43k • written 4.4 years ago by ▴ 30
4
votes
5
replies
1.9k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
0
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0
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981
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.4 years ago by 68k • written 6.4 years ago by ▴ 10
34 results • Page 1 of 1
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Comment: can't post by machne • 0
Below is the text I wanted to post. Here I got a short error message popup about ASCII-only. I didn't get this info before. Here replaced q…
Comment: competitive enrichment test yields too few significant results, self-contained t by Gordon Smyth 52k
`fry()` is a generic function with a method for DGEList objects, see `?fry.DGEList`. It doesn't convert to logCPMs but uses another edgeR-s…
Comment: competitive enrichment test yields too few significant results, self-contained t by ATpoint ★ 4.9k
Does it make sense to give the DGEList `y` to fry (or camera, roast etc) directly? It expects logcpms, so I would assume that you should be…
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik by ATpoint ★ 4.9k
The fact that probes are used is not the deciding factor, it is how the actual gene expression is measured. Arrays hybridize probes, indeed…
Comment: competitive enrichment test yields too few significant results, self-contained t by bbao ▴ 10
That makes sense!
Votes
Comment: competitive enrichment test yields too few significant results, self-contained t
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik
Answer: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
Comment: competitive enrichment test yields too few significant results, self-contained t
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