Bioconductor Methylaid

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minfi EPICv2manifest MethylAid

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methylaid

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MethylAid

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illimina 450k methylation methyanalysis methylaid

9.8 years ago jdangelo • 0

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Answer: Non-monotonic voomByGroup plot in Xenium data by Gordon Smyth 52k

It doesn't look like a problem to me, because the increase in the trend at low expression levels is very slight. If you don't like it thoug…

Comment: competitive enrichment test yields too few significant results, self-contained t by bbao ▴ 10

Thanks ATpoint, I will keep this in mind!

Answer: cytolib uses outdated boost call by James W. MacDonald 68k

Your version of R is old, as is your Bioconductor install. We do not support old versions of packages, so please upgrade to R-4.5.1 and re-…

Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik by richardallenfriedmanbrooklyn ▴ 30

Gordon, Thank you. My understanding matches what you wrote. My colleague requested that I get your view to settle our disagreement. Best …

Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik by richardallenfriedmanbrooklyn ▴ 30

ATpoint, Thank you. That is also my understanding. I will forward your reply to my colleague. Best wishes, Rich

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Comment: competitive enrichment test yields too few significant results, self-contained t

Answer: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik

Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik

Comment: competitive enrichment test yields too few significant results, self-contained t

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