Bioconductor Methylkit

Showing : methylkit • reset

votes

590

views

methylKit

updated 8 months ago by James W. MacDonald 68k • written 8 months ago by Satyanarayan • 0

votes

594

views

methylKit

updated 11 months ago by alex.gos90 ▴ 10 • written 11 months ago by Krisztina • 0

votes

replies

1.4k

views

methylKit

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by CHEN • 0

votes

503

views

methylKit

15 months ago Modoc Kesner ▴ 10

votes

replies

937

views

methylKit

23 months ago Andrés • 0

votes

927

views

methRead methylkit

2.6 years ago liulip • 0

votes

replies

1.0k

views

methyl methylKit

3.3 years ago hasche • 0

votes

replies

2.3k

views

GenomicRanges methylKit S4Vectors

updated 3.3 years ago by James W. MacDonald 68k • written 3.3 years ago by hasche • 0

votes

1.7k

views

methylkit

updated 3.7 years ago by alex.gos90 ▴ 10 • written 4.1 years ago by hasche • 0

votes

2.3k

views

methylation methylKit bsseq

updated 3.7 years ago by alex.gos90 ▴ 10 • written 4.0 years ago by Arindam ▴ 80

votes

1.9k

views

annotateWithGeneParts methylKit

3.8 years ago tanmayroy1979 ▴ 20

votes

replies

1.6k

views

methylkit normalizecoverage NA

updated 6.7 years ago by altuna akalin ▴ 20 • written 6.7 years ago by GFM ▴ 20

votes

replies

1.6k

views

R bioconductor methylation methylkit

updated 7.0 years ago by altuna akalin ▴ 20 • written 7.0 years ago by nilaycan • 0

votes

replies

2.3k

views

methylkit Tutorial

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by s1432985 • 0

votes

replies

2.2k

views

methylKit

updated 8.0 years ago by altuna akalin ▴ 20 • written 8.0 years ago by ch8316f5eyu • 0

votes

replies

2.1k

views

methylKit

8.1 years ago kamal.fartiyal84 ▴ 10

votes

replies

2.0k

views

methylKit bioconductor

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by tangming2005 ▴ 200

17 results • Page 1 of 1

Recent ...

Replies

Answer: Regarding the issue of background genes in enrichment analysis by ATpoint ★ 4.9k

It should imo be the genes that were eligable to yield a "significant" result in your analysis. So, if you test set is derived from differe…

Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR- by Gordon Smyth 52k

> How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()? Exactly the same. Both soft…

Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR- by anni • 0

Ok, thanks! I have just a couple more questions: 1. Based on the [limma User's Guide][1], for binary predictors like overweight, I have i…

Comment: Online workshop "Working with ChatGPT in R" 2023-03-09 by tnaru607 • 0

Thanks for sharing your workflow and benchmarking approach - very informative! I've been experimenting with AI-assisted tools recently, es…

Comment: minfi latest update for EPIC V2 chip by UlyssesHenson • 0

These provide updated manifests and annotations aligned with the latest genome build (hg38) and probe content for the EPIC V2 array. [itali…

Votes

Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2

I would like to perform differential expression analysis of lncRNAs using DESeq2 and edgeR.

Answer: ExperimentHub full metadata

Answer: AnnotationHub/ExperimentHub resources backup

Answer: ExperimentHub full metadata

Awards • All

Scholar to James W. MacDonald 68k