Bioconductor Methylsig

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methylSig bsseq

updated 2.8 years ago by Peter Hickey ▴ 760 • written 2.8 years ago by carla.geiger • 0

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methylsig no replicates dmr

7.0 years ago nilaycan • 0

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Answer: Regarding the issue of background genes in enrichment analysis by ATpoint ★ 4.9k

It should imo be the genes that were eligable to yield a "significant" result in your analysis. So, if you test set is derived from differe…

Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR- by Gordon Smyth 52k

> How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()? Exactly the same. Both soft…

Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR- by anni • 0

Ok, thanks! I have just a couple more questions: 1. Based on the [limma User's Guide][1], for binary predictors like overweight, I have i…

Comment: Online workshop "Working with ChatGPT in R" 2023-03-09 by tnaru607 • 0

Thanks for sharing your workflow and benchmarking approach - very informative! I've been experimenting with AI-assisted tools recently, es…

Comment: minfi latest update for EPIC V2 chip by UlyssesHenson • 0

These provide updated manifests and annotations aligned with the latest genome build (hg38) and probe content for the EPIC V2 array. [itali…

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Answer: ExperimentHub full metadata

Answer: AnnotationHub/ExperimentHub resources backup

Answer: ExperimentHub full metadata

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