Bioconductor Seqarray

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seqArray seqVCF2GDS

updated 5.1 years ago by Stephanie M. Gogarten ▴ 890 • written 5.1 years ago by ealopera • 0

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1.8k

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software error SeqArray seqVCF2GDS

updated 5.9 years ago by zhengx ▴ 30 • written 5.9 years ago by winstondunnmd ▴ 10

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SeqArray

updated 6.3 years ago by zhengx ▴ 30 • written 6.4 years ago by miyouduniu • 0

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2.2k

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genesis gwastools seqarray

6.7 years ago • updated 6.4 years ago Stephanie M. Gogarten ▴ 890

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1.9k

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seqarray

updated 6.9 years ago by Stephanie M. Gogarten ▴ 890 • written 6.9 years ago by cav3gh • 0

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2.5k

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SeqArray info SeqArray::info()

7.6 years ago • updated 7.5 years ago qliu7 • 0

6 results • Page 1 of 1

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Answer: Regarding the issue of background genes in enrichment analysis by ATpoint ★ 4.9k

It should imo be the genes that were eligable to yield a "significant" result in your analysis. So, if you test set is derived from differe…

Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR- by Gordon Smyth 52k

> How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()? Exactly the same. Both soft…

Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR- by anni • 0

Ok, thanks! I have just a couple more questions: 1. Based on the [limma User's Guide][1], for binary predictors like overweight, I have i…

Comment: Online workshop "Working with ChatGPT in R" 2023-03-09 by tnaru607 • 0

Thanks for sharing your workflow and benchmarking approach - very informative! I've been experimenting with AI-assisted tools recently, es…

Comment: minfi latest update for EPIC V2 chip by UlyssesHenson • 0

These provide updated manifests and annotations aligned with the latest genome build (hg38) and probe content for the EPIC V2 array. [itali…

Votes

Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2

I would like to perform differential expression analysis of lncRNAs using DESeq2 and edgeR.

Answer: ExperimentHub full metadata

Answer: AnnotationHub/ExperimentHub resources backup

Answer: ExperimentHub full metadata

Awards • All

Scholar to James W. MacDonald 68k