Bioconductor Singlecellmultimodal

Showing : singlecellmultimodal • reset

1

vote

1

reply

1.5k

views

labels PBMC SingleCellMultiModal 10X

updated 3 months ago by ATpoint ★ 4.9k • written 3 months ago by javier.ruizramirez • 0

2

votes

3

replies

2.8k

views

SingleCellMultiModal ensembldb rtracklayer Annotation

updated 2.5 years ago by rbj • 0 • written 2.6 years ago by Jake ▴ 10

0

votes

1

reply

1.0k

views

SingleCell SingleCellMultiModal allele

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by oliver.crook • 0

0

votes

0

replies

1.0k

views

SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST

3.0 years ago Nik Tuzov ▴ 90

4 results • Page 1 of 1

Recent ...

Replies

Answer: Regarding the issue of background genes in enrichment analysis by ATpoint ★ 4.9k

It should imo be the genes that were eligable to yield a "significant" result in your analysis. So, if you test set is derived from differe…

Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR- by Gordon Smyth 52k

> How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()? Exactly the same. Both soft…

Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR- by anni • 0

Ok, thanks! I have just a couple more questions: 1. Based on the [limma User's Guide][1], for binary predictors like overweight, I have i…

Comment: Online workshop "Working with ChatGPT in R" 2023-03-09 by tnaru607 • 0

Thanks for sharing your workflow and benchmarking approach - very informative! I've been experimenting with AI-assisted tools recently, es…

Comment: minfi latest update for EPIC V2 chip by UlyssesHenson • 0

These provide updated manifests and annotations aligned with the latest genome build (hg38) and probe content for the EPIC V2 array. [itali…

Votes

Answer: I would like to perform differential expression analysis of lncRNAs using DESeq2

I would like to perform differential expression analysis of lncRNAs using DESeq2 and edgeR.

Answer: ExperimentHub full metadata

Answer: AnnotationHub/ExperimentHub resources backup

Answer: ExperimentHub full metadata

Awards • All

Scholar to James W. MacDonald 68k