Bioconductor Tcgautils

Showing : tcgautils • reset

votes

700

views

TCGAutils

updated 6 months ago by James W. MacDonald 68k • written 6 months ago by xiaofeiwang18266 ▴ 60

votes

1.1k

views

normalization RNASEQ Normalization TCGAutils TCGA

updated 2.6 years ago by ATpoint ★ 4.9k • written 2.6 years ago by Deniz • 0

votes

replies

2.4k

views

MultiAssayExperiment curatedTCGAData TCGAutils

4.6 years ago svlachavas ▴ 840

votes

replies

1.6k

views

MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.6 years ago by Marcel Ramos 700 • written 4.6 years ago by svlachavas ▴ 840

votes

replies

1.8k

views

MultiAssayExperiment curatedTCGAData TCGAutils

updated 4.6 years ago by Marcel Ramos 700 • written 4.8 years ago by svlachavas ▴ 840

votes

replies

5.3k

views

TCGAutils TCGAbiolinks GenomicDataCommons

updated 6.0 years ago by Marcel Ramos 700 • written 6.0 years ago by Dario Strbenac ★ 1.6k

votes

1.0k

views

TCGAutils

updated 6.3 years ago by Levi Waldron ★ 1.1k • written 6.3 years ago by vittorio.fortino • 0

votes

replies

1.8k

views

TCGAutils multiassayexperiment coad

updated 7.1 years ago by Marcel Ramos 700 • written 7.1 years ago by mario.zanfardino ▴ 160

8 results • Page 1 of 1

Recent ...

Replies

Comment: blockwiseModule crashes in the end and doesn't generate modules by quordle • 0

your blockwiseModules crash reminds me of [quordle puzzles][1] looks fine until the last block throws a twist. the error seems tied to a fu…

Comment: Non-monotonic voomByGroup plot in Xenium data by richardallenfriedmanbrooklyn ▴ 30

Thank you. I willleave as is and proceed.

Answer: Non-monotonic voomByGroup plot in Xenium data by Gordon Smyth 52k

It doesn't look like a problem to me, because the increase in the trend at low expression levels is very slight. If you don't like it thoug…

Comment: competitive enrichment test yields too few significant results, self-contained t by bbao ▴ 10

Thanks ATpoint, I will keep this in mind!

Answer: cytolib uses outdated boost call by James W. MacDonald 68k

Your version of R is old, as is your Bioconductor install. We do not support old versions of packages, so please upgrade to R-4.5.1 and re-…

Votes

Answer: Non-monotonic voomByGroup plot in Xenium data

Comment: competitive enrichment test yields too few significant results, self-contained t

Answer: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik

Comment: Should Xenium pseudobulk experiments be analysed like microarrays (limma) or lik

Awards • All